CF836510

Overview
NameCF836510
Unique NameCF836510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836510 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 83/269 (30.86%), Postives = 111/269 (41.26%), Query Frame = 3
Query:    6 MATSTMA----LSSSFV-----GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 695
            MAT++ A    LSSSF+      +A+  AP    +  GG  + ++    + ++   W    R    G  +   P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A
Sbjct:    1 MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARV--GGAATPKRFTVLAAAAKKSWIPAVR----GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA 244          
BLAST of CF836510 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.406e-14
Identity = 64/196 (32.65%), Postives = 82/196 (41.84%), Query Frame = 3
Query:  198 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 695
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA 244          
BLAST of CF836510 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.143e-14
Identity = 64/196 (32.65%), Postives = 83/196 (42.35%), Query Frame = 3
Query:  198 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQA 695
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA 249          
The following BLAST results are available for this feature:
BLAST of CF836510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4A_SOLLC1.666e-1530.86Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.406e-1432.65Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL3.143e-1432.65Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03B09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836510 ID=CF836510; Name=CF836510; organism=Citrus sinensis; type=EST; length=751bp
GTAAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAG
GCTGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCAT
CTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGT
ACGGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCA
AGCTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGG
GCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCA
TCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAG
CTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGC
GGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAA
GCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTC
TTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGA
AGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAAT
GGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGT
CACCGGCAAGGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCT
G
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