CF836589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19 Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = -2 Query: 213 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 527 +S +AGL FPVGR LL+ Y AA+LEYL+AE+LELAGNAS+D K KRITPR L LA+R DE L+ L+ G TIA GGV+P+I + L+ K K Sbjct: 32 QSKKAGLTFPVGRTGSLLRAGRYAKRVGKGAPV-YLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18 Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = -2 Query: 231 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLEL----AGNASKDL-KVKRITPRHLQLAIRGDE*LDTLIK--GTIAGGGVIPHIHKSL 536 PV +S++AGL FPVGR+HR+LK VY AAILEYL +EVLEL SK+ V+RI+PRHL LAI+ DE LD LI+ TIAGGGVIP+IH+ L Sbjct: 17 PVPKSTKAGLIFPVGRIHRMLKN-KVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17 Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = -2 Query: 285 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTL 527 RSSRAGLQFPVGRVHR L++ Y AA+LEYL AE+LELAGNA++D K RI PRHLQLAIR DE L+ L Sbjct: 9 RSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.400e-14 Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = -2 Query: 189 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLI--NKSSKE*FVTPSS 527 RS++AGL FPVGRV LL+ Y AA+LEYLTAE+LEL+ A+ K KR+TPR + LA+R D+ L L+K T++ GGV+P ++K+L +KSSK+ TPS+ Sbjct: 19 RSAKAGLIFPVGRVGSLLRRGQYARRIGASGAV-YMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARATPSA 135
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13 Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = -2 Query: 213 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 536 P SRS+RAG+ FPV RV RLL+E Y AA+LEYL E+LELA N K RITP+H+ A+ D L++L + TIA GGV+P +S K K Sbjct: 34 PESRSARAGITFPVSRVDRLLREGRFAPRVESTAPV-YLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = -2 Query: 213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 530 +RSSRAGLQFPVGRVHRLL++ VY AA+LEYLTAE+LELA ++ + + ++ DE L+ L+ G TIA GGV+P+I L+ K ++ Sbjct: 17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12 Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTI--AGGGVIPHIHKSLINKSSK 530 S S ++GL FP GR+ R LK+ Y A +LEYL AEVLE AGN +K+ ++ RI P H++ A R D L+ + GTI GG + +INKS K Sbjct: 282 STSQKSGLVFPCGRLRRYLKQACKQFRVSSSCNI-YLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11 Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = -2 Query: 210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530 SRS+RA L FPV R+ ++++E + AA+LEYLT E+LEL+ + RITP+H+ L+I D L+ L+K TIA GGV IH L++ K+ Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPV-FLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKK 238
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11 Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -2 Query: 189 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 530 S+S++ GL FPVGRV +++ Y AA+LEYLTAE+LEL+ A+ K R+ PR + LA R D+ + TL+K T++ GV+P+I K++ K K+ TPS+ Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGKKGKATPSA 132 The following BLAST results are available for this feature:
BLAST of CF836589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836589 ID=CF836589; Name=CF836589; organism=Citrus sinensis; type=EST; length=747bpback to top |