CF836589

Overview
NameCF836589
Unique NameCF836589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.107e-19
Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  213 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 527
            +S +AGL FPVGR   LL+               Y AA+LEYL+AE+LELAGNAS+D K KRITPR L LA+R DE L+ L+ G TIA GGV+P+I + L+ K  K
Sbjct:   32 QSKKAGLTFPVGRTGSLLRAGRYAKRVGKGAPV-YLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  231 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLEL----AGNASKDL-KVKRITPRHLQLAIRGDE*LDTLIK--GTIAGGGVIPHIHKSL 536
            PV +S++AGL FPVGR+HR+LK              VY AAILEYL +EVLEL        SK+   V+RI+PRHL LAI+ DE LD LI+   TIAGGGVIP+IH+ L
Sbjct:   17 PVPKSTKAGLIFPVGRIHRMLKN-KVPLKRVSILSSVYLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.036e-17
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = -2
Query:  285 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTL 527
            RSSRAGLQFPVGRVHR L++              Y AA+LEYL AE+LELAGNA++D K  RI PRHLQLAIR DE L+ L
Sbjct:    9 RSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPV-YLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.400e-14
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  189 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLI--NKSSKE*FVTPSS 527
            RS++AGL FPVGRV  LL+               Y AA+LEYLTAE+LEL+  A+     K KR+TPR + LA+R D+ L  L+K  T++ GGV+P ++K+L   +KSSK+   TPS+
Sbjct:   19 RSAKAGLIFPVGRVGSLLRRGQYARRIGASGAV-YMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKKARATPSA 135          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.022e-13
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  213 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 536
            P SRS+RAG+ FPV RV RLL+E              Y AA+LEYL  E+LELA N     K  RITP+H+  A+  D  L++L +  TIA GGV+P   +S   K  K
Sbjct:   34 PESRSARAGITFPVSRVDRLLREGRFAPRVESTAPV-YLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.449e-13
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 530
            +RSSRAGLQFPVGRVHRLL++             VY AA+LEYLTAE+LELA     ++  + +       ++  DE L+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRK-GNYAERVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKGTI--AGGGVIPHIHKSLINKSSK 530
            S S ++GL FP GR+ R LK+              Y A +LEYL AEVLE AGN +K+ ++ RI P H++ A R D  L+  + GTI   GG    +    +INKS K
Sbjct:  282 STSQKSGLVFPCGRLRRYLKQACKQFRVSSSCNI-YLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRS+RA L FPV R+ ++++E              + AA+LEYLT E+LEL+   +      RITP+H+ L+I  D  L+ L+K  TIA GGV   IH  L++   K+
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPV-FLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKK 238          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  189 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLI-NKSSKE*FVTPSS 530
            S+S++ GL FPVGRV  +++               Y AA+LEYLTAE+LEL+  A+     K  R+ PR + LA R D+ + TL+K  T++  GV+P+I K++   K  K+   TPS+
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAV-YLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGKKGKATPSA 132          
The following BLAST results are available for this feature:
BLAST of CF836589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_EUGGR1.107e-1952.83Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2AZ_DICDI6.074e-1854.13Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ ... [more]
H2A3_STRPU1.036e-1761.73Histone H2A-beta, sperm (Fragment) OS=Strongylocen... [more]
H2A_TRYCR1.400e-1445.76Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2AX_DICDI2.022e-1344.95Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2A2_XENLA3.449e-1344.86Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3[more]
H2AY_TETTH2.236e-1240.74Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY P... [more]
H2AV1_DICDI1.449e-1139.81Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A1_LEIIN5.506e-1138.98Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03D16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836589 ID=CF836589; Name=CF836589; organism=Citrus sinensis; type=EST; length=747bp
ATATGAATTATTTAAAATTAAACAGTAACAGTTCAATACCAACATGGGAA
AAAACAAGCACCATAATTCGTCGCTGCATGAAATGAGGATTGAAGAATGC
AGATTCCTAGCATTAACACATCTTTGGCATCATTTCTCATTTAGATATTT
CAGCACAGCTAAAAGTACACACATAAACAAAGCCGAGAGGATGACGGTGT
CACGAACTACTCTTTGGAGGATTTATTGATGAGGGACTTGTGGATATGAG
GAATAACTCCTCCACCGGCTATGGTTCCTTTAATGAGAGTGTCAAGTTAT
TCATCTCCTCGGATAGCAAGCTGCAAATGCCTTGGAGTAATACGTTTGAC
CTTCAAATCCTTGCTAGCATTCCCTGCCAACTCCAACACTTCGGCAGTTA
GATATTCCAAAATGGCTGCTGTATAAACAGCAGCTGTTGCGCCAACCCTT
CCGTGAGCAGCAGCCCTTTCCTTTAGTAGACGATGGACCCTTCCCACTGG
GAACTGAAGACCAGCACGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCT
TATCCTTGTTGTTGTTAATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCT
CCTTTGCCCGACATTTTCCCGCCTAATTGCTACAGCTTCTTTTAAATTAA
TTAATTATTTATTTAATTATTTTTAATTTTTTCTGAGATGAAAATTATCG
GAGAAGAAAGAAAGAGATAAAGCAAAGCGAGCGTTTGAGATTTTTCC
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