CF836589

Overview
NameCF836589
Unique NameCF836589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DE L+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DE L+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DE L+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  210 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSKE 530
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DE L+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = -2
Query:  216 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSS 530
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DE L+ L+ G TIA GGV+P+I   L+ K S
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = -2
Query:  216 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSS 530
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DE L+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 530
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DE L+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLIKG-TIAGGGVIPHIHKSLINKSSK 530
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DE L+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLI-KGTIAGGGVIPHIHKSLINKSSK 530
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DE L+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CF836589 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = -2
Query:  213 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE*LDTLI-KGTIAGGGVIPHIHKSLINKSSK 530
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DE L+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
The following BLAST results are available for this feature:
BLAST of CF836589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_MYTGA4.343e-2458.33Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED4.343e-2458.33Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH4.343e-2458.33Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA4.343e-2458.33Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_XENLA4.343e-2459.43Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AX_HUMAN4.343e-2460.38Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A2B_MOUSE4.343e-2458.88Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN4.343e-2458.88Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2AJ_MACFA5.672e-2459.81Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN5.672e-2459.81Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03D16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03D16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836589 ID=CF836589; Name=CF836589; organism=Citrus sinensis; type=EST; length=747bp
ATATGAATTATTTAAAATTAAACAGTAACAGTTCAATACCAACATGGGAA
AAAACAAGCACCATAATTCGTCGCTGCATGAAATGAGGATTGAAGAATGC
AGATTCCTAGCATTAACACATCTTTGGCATCATTTCTCATTTAGATATTT
CAGCACAGCTAAAAGTACACACATAAACAAAGCCGAGAGGATGACGGTGT
CACGAACTACTCTTTGGAGGATTTATTGATGAGGGACTTGTGGATATGAG
GAATAACTCCTCCACCGGCTATGGTTCCTTTAATGAGAGTGTCAAGTTAT
TCATCTCCTCGGATAGCAAGCTGCAAATGCCTTGGAGTAATACGTTTGAC
CTTCAAATCCTTGCTAGCATTCCCTGCCAACTCCAACACTTCGGCAGTTA
GATATTCCAAAATGGCTGCTGTATAAACAGCAGCTGTTGCGCCAACCCTT
CCGTGAGCAGCAGCCCTTTCCTTTAGTAGACGATGGACCCTTCCCACTGG
GAACTGAAGACCAGCACGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCT
TATCCTTGTTGTTGTTAATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCT
CCTTTGCCCGACATTTTCCCGCCTAATTGCTACAGCTTCTTTTAAATTAA
TTAATTATTTATTTAATTATTTTTAATTTTTTCTGAGATGAAAATTATCG
GAGAAGAAAGAAAGAGATAAAGCAAAGCGAGCGTTTGAGATTTTTCC
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