CF836600

Overview
NameCF836600
Unique NameCF836600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.525e-29
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  419 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 712
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10B_DROME (40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.217e-28
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = -1
Query:  425 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 712
            M +P+ +R  I +YLF+EGV  AKKD++  KHPE++ +PNL VIK MQS  S+  V+E FAW HYYWYLTNEGIE LR YL+LP EIVP+TLK+ A+
Sbjct:    1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPAR 97          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.426e-28
Identity = 58/101 (57.43%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  419 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 712
            M++P+K+R  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR +L+LP EIVPATL++    T
Sbjct:    1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET 101          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 55/97 (56.70%), Postives = 76/97 (78.35%), Query Frame = -1
Query:  422 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 712
            M+IP++NR+ I + LFQ+GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR YL+LP+E+VPAT K+Q +P
Sbjct:    1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.742e-27
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = -1
Query:  419 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 712
            M+IP++NR+ I + LF +GV  AKKD+NL KHPE+ VPNLQVIK  QS  S+ Y++  + W  +Y+ LTNEG+E+LR YL+LP+E+VPAT K+Q +PT
Sbjct:    1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPT 98          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10_DICDI (40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.042e-26
Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = -1
Query:  428 IIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQA 709
            +IP +N+  I +YLFQEGV  A KD++LAKHP+I+ V NL V+++++SFKS+++V ETF W +YYW LT EGI++LR YL +P  +VPAT+KKQA
Sbjct:    3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10L_HUMAN (Putative 40S ribosomal protein S10-like protein OS=Homo sapiens GN=RPS10P5 PE=5 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.778e-26
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  440 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATL 712
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+  V+E FAW H+YWYLTNEG ++LR YL+LP EIVPATL
Sbjct:    1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATL 94          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.778e-26
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = -1
Query:  419 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 712
            M++P+++R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR YLNLP  IVP T  ++  PT
Sbjct:    1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPT 98          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10A_DROME (40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.960e-26
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  425 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 712
            M IP+ NR  I +YLF+EGV  AKKD  + KH E+D +PNLQVIK+MQS  S+ +V+E FAW H+YW LTNEGIE LR YL+LP EIVP+TL +  +
Sbjct:    1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97          
BLAST of CF836600 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.755e-26
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = -1
Query:  419 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 712
            M++P++ R +I +YLFQEGV  AKKD+N AKH EID  NL VIK +QS  SK YV+  F+W +YY+ LT EG+E+LR YLNLP  IVP T  ++  P+
Sbjct:    1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
The following BLAST results are available for this feature:
BLAST of CF836600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10_BOVIN8.525e-2959.4140S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10B_DROME7.217e-2860.8240S ribosomal protein S10b OS=Drosophila melanogas... [more]
RS10_XENLA9.426e-2857.4340S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]
RS10B_SCHPO2.742e-2756.7040S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10A_SCHPO2.742e-2756.1240S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10_DICDI1.042e-2656.8440S ribosomal protein S10 OS=Dictyostelium discoid... [more]
RS10L_HUMAN1.778e-2660.64Putative 40S ribosomal protein S10-like protein OS... [more]
RS10A_YEAST1.778e-2656.1240S ribosomal protein S10-A OS=Saccharomyces cerev... [more]
RS10A_DROME3.960e-2659.7940S ribosomal protein S10a OS=Drosophila melanogas... [more]
RS10B_YEAST6.755e-2655.1040S ribosomal protein S10-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836600 ID=CF836600; Name=CF836600; organism=Citrus sinensis; type=EST; length=796bp
TTTTTTTTTTTTTTTATCTCATGCCATCAAAACAAAAATTAAATATCTTT
TAAAAAATCCCACAACCACCAGTCCCAAACAATGCACCCTTTAAACAAAG
ACTGCCATACACTCAGCAATCTTGTAACCAAAATTCCTAAATCCCTCAAG
ATGCAGAACTCATCTCTCAAGGAAGATTTGAGCTTGCAGACCCTGCACCA
AAACCACCACCGCCACGACCAAACCCTGGCCTTCCACCAGGGCCCCTGAA
AGATGGCTGATAGTCAGCAGGAGCTCCACCCTTGTCACCAAAATCACCAC
CTGCTCCTCGTGGAGCTCCGCGGTATCCATCTCGGTCACCAAATCTTCTC
TCTCCACCATCGAAGCGCGGTGGGCCACGTGGGCGATCACCCCCTGGGCC
ACCAAAAGGACGACCACCTGTGGGCTTGGCCTGTTTCTTCAAAGTGGCGG
GGACAATTTCAGAAGGCAGATTGAGGTAACCTCTGAGGAACTCAATGCCT
TCATTGGTAAGGTACCAGTAATAATGCATCCAGGCAAAGGTCTCGCGGAC
GTACTCCTTTGACTTGAAGCTCTGCATCAACTTAATCACCTGTAGATTCG
GGACATCGATTTCTGGGTGCTTTGCCAAATTGTAGTCTTTCTTTGCGTAG
CACACACCCTCTTGGAAGAGGTACTTGGAGATCTCACGGCGGTTTTTCTC
TGGAATGATCATGATTGCGATGAAGAGGTGATGATTGAGAAAAGAGGCTG
CAAGGAAGAACAAATCTCACACTCTTATCGCTTCTGTAGCACCAAA
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