CF836616

Overview
NameCF836616
Unique NameCF836616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_RICPR (UDP-glucose 6-dehydrogenase OS=Rickettsia prowazekii GN=udg PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 75/232 (32.33%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAKLSKLAANAFLAQRISSVN 741
            + I  IG+GYVG   ++ I +      V  +D    +I+  N   LPIYE  LD  +K       L F+          D +F++V TP+K  G      ADL Y   A   ++     D ++V KSTVP  +   I   L   +KG  F + SNPEFL EG+A++D   PDR+++G       +++   L+ +YA  + +  + L TNL +++L K  +N+FLA +I+ +N
Sbjct:    1 MNITFIGSGYVG--LVSGIIMGYLGHNVTCLDNDDVKISKLNKKILPIYEAKLDEYLKHALESDRLKFTNIYSNEFRNFDAIFITVGTPSKELG-----EADLKYVYDAVDKVSKHINKDCLIVIKSTVPPGSCNNIIAYL--KAKGFSFNVASNPEFLREGSAVEDFLYPDRIVVG----VNNKESEALLRKIYAPLIEQGAKFLVTNLVTSELIKYVSNSFLATKIAFIN 219          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_RICBR (UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 74/233 (31.76%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY-WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAKLSKLAANAFLAQRISSVN 741
            + I  IG+GYVG   ++ + +      V  +D   ++I+  N   LPIYE  LD    Q    + L F++   + +   + VF++V TP+K  G      ADL+Y +E+  ++   ++K D ++V KSTVP  +   I   L    KG  F + SNPEFL EG A++D   PDR++IG       +++   L+ +Y         ++ T+L +A+L K  +N+FLA +I+ +N
Sbjct:    1 MNITFIGSGYVG--LVSGVMMSYLGHNVTCLDNDEAKISKLNKRILPIYETKLDKYFTQALEHERLKFTSFYNEELKNTEAVFITVGTPSKASG-----EADLSYVYEAIDKISLHINK-DCLIVIKSTVPPNSCNNIINYL--KEKGFSFNVASNPEFLREGNAVEDFLYPDRIVIG----VNNKESEDILRKIYMPLTDNGAELVITDLVTAELIKYGSNSFLATKIAFIN 219          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 75/230 (32.61%), Postives = 115/230 (50.00%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +A++ KL  N +    I+  N
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALAN 222          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 74/230 (32.17%), Postives = 117/230 (50.87%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KIC IG GY+G PT +++A      +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I TT+  +A++ KL  N +    I+  N
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYDVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGQIYTTDSNTAEMVKLMENTYRDINIALAN 222          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 72/230 (31.30%), Postives = 115/230 (50.00%), Query Frame = 1
Query:   55 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL    +V+   +EAD   + V TP      G+ K  DLTY   A + I    K   ++V +ST+P +  + I + +       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +A++ KL  N +    I+  N
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVQTSATEADAFIICVPTPALENEDGS-KKCDLTYVMGAVQNIIPFLKEGNLIVIESTIPPEITKKIYETIDK-----KIYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALAN 222          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: ALGD_PSEAE (GDP-mannose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=algD PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.939e-16
Identity = 68/238 (28.57%), Postives = 116/238 (48.74%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKN-LFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            ++I   G GYVG      ++ +    EV  VD+S ++I+  N  + PI EPGL+ +++Q R    L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R     I + S+   +VV  + +P      +  ++   S    G+ F + +NPEFL E TAI+D   P   +IG  +   G      L+++Y     +  I+   +  A++ K   N + A +++  N
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFAN 225          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_METVS (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.369e-16
Identity = 74/234 (31.62%), Postives = 113/234 (48.29%), Query Frame = 1
Query:   43 RKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +K+ KIC IG GY+G PT +++A      EV  VDIS  R+N   +    I EPGL  ++K     KNL   T  EK    AD   + V TP      G+ K  DL+Y   A   I        ++V +ST+P +T + I  I+       K  +   PE +  G  +++L   DR+ IGG      +K+ +  K++Y  +V E +I  T+  +A++ KL  N +    I+  N
Sbjct:    7 QKIKKICVIGLGYIGLPTASMLANH--GYEVIGVDISEKRVNEIKNGDFKIEEPGLLTLLKGAINSKNLNVKTKAEK----ADAFIICVPTPAIGCDDGS-KKCDLSYVLDAVNSILPYIDEGNLIVIESTIPPETTQKIYDIIDK-----KVYVAHCPERVLPGKILKELVENDRI-IGG----INKKSAEMAKEIYKSFV-EGKIYITDSNTAEMVKLMENTYRDINIALAN 222          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: EPSD1_RALSO (NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 69/238 (28.99%), Postives = 112/238 (47.06%), Query Frame = 1
Query:   58 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            I  +G GY+G PT  V+A +    EV  VDI+   ++  N  ++ I EP LD +V+    +    +T   +    AD   ++V TP         K  DL+Y E+AAR IA V K   +VV +ST PV   E +   L+     + F          ++   PE +  G  +++L   DR++  G  TP+  +A + L +++       R + T+  +A++ KL  NAF    I+  N
Sbjct:   12 ISVVGLGYIGLPTATVLASR--QREVIGVDINQHAVDTINQGRIHIVEPDLDMLVRAAVSQGYLRATTEPE---PADAFLIAVPTPFLDN-----KQPDLSYIEAAARAIAPVLKRGDLVVLESTSPVGATEQLSDWLSAQRPDLSFPHQQGEESDIRVAHCPERVLPGHVLRELVENDRII--GGMTPKCSEAAQRLYELFV----RGRCIVTDARTAEMCKLTENAFRDVNIAFAN 233          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: ALGD_PSEPK (GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 69/239 (28.87%), Postives = 112/239 (46.86%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQG-LGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            ++I   G GYVG      +  +    EV  VD+S ++I+  N  + PI EPGL+ +++Q      L  +TD  + +  +D+  + V TP+K  G LG      L Y ES  R    V+ D ++   IVV  + +P      +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  ++  G      L+ +Y     +  I+   +  A++ K   N + A +++  N
Sbjct:    1 MRISIFGLGYVGAVCAGCLTAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGIANGRLRGTTDFAEAIRASDVSMICVGTPSKKNGDLG------LEYIESVCREIGYVLRDTTRRHTIVVRSTVLPGTVKNVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDQPPMTVIGELDSASGD----ILQALYEEL--DAPIIRKPIEVAEMIKYTCNVWHATKVTFAN 225          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_META3 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 69/234 (29.49%), Postives = 113/234 (48.29%), Query Frame = 1
Query:   43 RKMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +++ KIC +G GY+G PT +++A++    +V  VDI   R+      +L I E GL  ++       NL   T+ E    EAD+  + V TP        GK  DL    SA   I    K   +++ +ST+P KT E I   ++ N+ G    +   PE +  G  +++L   DR  IGG      +K+ +  K++YA ++ E  +  T+  +A++ KL  N F    I+  N
Sbjct:    9 KEINKICVVGLGYIGLPTASMLAIQ--GYKVIGVDIDEERVKTIRDGKLIINEQGLMTLLTGAITSGNLVVKTEPE----EADVYIICVPTPATAD--KNGKKCDLICVLSAVNNIKPYLKDGDLIIIESTIPPKTTEKIYDDISKNT-GKNIYMAYCPERVLPGNILKELVENDRT-IGG----INKKSAQLAKEIYASFI-EGNLYITDSTTAEMVKLMENTFRDVNIALAN 227          
The following BLAST results are available for this feature:
BLAST of CF836616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
UDG_RICPR2.365e-2232.33UDP-glucose 6-dehydrogenase OS=Rickettsia prowazek... [more]
UDG_RICBR1.174e-2131.76UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (... [more]
WECC_METM72.072e-1832.61UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METMP2.706e-1832.17UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METM58.705e-1731.30UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
ALGD_PSEAE1.939e-1628.57GDP-mannose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
WECC_METVS7.369e-1631.62UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
EPSD1_RALSO2.800e-1528.99NDP-N-acetyl-D-galactosaminuronic acid dehydrogena... [more]
ALGD_PSEPK3.657e-1528.87GDP-mannose 6-dehydrogenase OS=Pseudomonas putida ... [more]
WECC_META36.239e-1529.49UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836616 ID=CF836616; Name=CF836616; organism=Citrus sinensis; type=EST; length=743bp
TTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGTAAAGGAAAAT
GGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGGCCGACAATGG
CAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTTGATATC
TCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGA
GCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCT
TCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTT
TCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTGGCAAAGCTGC
AGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCCGATGTGTCAA
AGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCT
GAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCA
GATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATC
TTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGC
CAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGA
AGACCGAATTTTGACCACCAACCTCTGGTCTGCAAAGCTTTCGAAGCTTG
CAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGC
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