CF836616

Overview
NameCF836616
Unique NameCF836616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: WECC_YERPE (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 71/239 (29.71%), Postives = 103/239 (43.10%), Query Frame = 1
Query:   58 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            I  IG GY+G PT A  A +    +V  VD++   +   N   + I EP LD VVK    G  L   T  +     AD   ++V TP K          D+ + ESAA+ IA V K   +V+ +ST PV   E + + L      + F           I   PE +  G  + +L   DRV+  G  TP+      AL  ++     E   + TN  +A++ KL  N+F    I+  N
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--KKKVIGVDVNAHAVETINRGAIHIVEPDLDKVVKIAVEGGYLQAVTKPQ----AADAFLIAVPTPFK-----GDHEPDMIFVESAAKSIAPVLKKGDLVILESTSPVGATEQMAQWLAEARPDLSFPQQAGEAADINIAYCPERVLPGQVMVELIQNDRVI--GGMTPKCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFAN 227          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_ECO11 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 68/234 (29.06%), Postives = 107/234 (45.73%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA      EV  +DI  +++   N  + PI +  ++  +     K L F    +K+ +  D  +V + TPT    KT              ES  R + D++ +  +V+ KST+PV     +++ L     GI   I  +PEFL EG A+ D  +P R++IG R    G+ A    +      +P    L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGILIA---QHHEVVALDIVPTKVEMLNQKKSPIVDKEIEEYLAT---KQLNFRATTDKYDAYRDGTYVIIATPTDYDPKTNYFNTSSV------ESVIRDVVDINPNAVMVI-KSTIPVGFTNLLKERL-----GID-NIFFSPEFLREGRALYDNLHPSRIVIGERSERAGRFAALLQEGAVKKDIP---TLFTDSTEAEAIKLFANTYLALRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG8_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=ugd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 68/232 (29.31%), Postives = 110/232 (47.41%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSK--SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA    + EV  +DI  ++++  N  Q PI +  ++  +     K+L F    +K+ +  +  +V + TPT           +     S   VI DV++   + ++V KST+PV   ++I++ L     GI   I S PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGILIA---QNHEVVALDIVQAKVDMLNKKQSPIVDKEIEEYLAT---KDLNFRATTDKYDAYKNADYVIIATPTDYD-----PKTNYFNTSSVEAVIRDVTEINPNAVMVIKSTIPVGFTKSIKERL-----GIDNLIFS-PEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_ECO57 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O157:H7 GN=ugd PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 69/233 (29.61%), Postives = 108/233 (46.35%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVKTAEAI-EKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA    + EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV   EA+ +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTEAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_ECOLI (UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 69/233 (29.61%), Postives = 108/233 (46.35%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA    + EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P   +L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---MLFTDSTEAEAIKLFANTYLAMRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_SHIFL (Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 69/233 (29.61%), Postives = 107/233 (45.92%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA    + EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG_ECOL6 (UDP-glucose 6-dehydrogenase OS=Escherichia coli O6 GN=ugd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 69/233 (29.61%), Postives = 107/233 (45.92%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK--IVVEKSTVPVK-TAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   G GYVG     +IA    + EV  +DI  SR+   N    PI +  +   ++  +   + F+  ++K+ +  D  +V + TPT           +     S   VI DV + +   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++IG R     + A    +      +P    L T+   A+  KL AN +LA R++  N
Sbjct:    1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNATLDKNEAYRDADYVIIATPTDYD-----PKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFN 212          
BLAST of CF836616 vs. ExPASy Swiss-Prot
Match: UDG5_ECOLX (UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 63/230 (27.39%), Postives = 107/230 (46.52%), Query Frame = 1
Query:   52 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAKLSKLAANAFLAQRISSVN 741
            +KI   GAGYVG   ++   L   + EV   D    +++  N    PI +  ++  +     K L F     K+ +  +  +V + TPT           D +  E+  R + +++ +  I+V KSTVPV   + I++ L  N+      I+ +PEFL EG A+ D  +P R++IG       + AV   +      +P   +L T+   A+  KL +N +LA R++  N
Sbjct:    5 LKITVSGAGYVG---LSNGILMAQNHEVVAFDTHQKKVDLLNDKLSPIEDKEIENYLST---KILNFRATTNKYEAYKNANYVIIATPTNYDP--GSNYFDTSSVEAVIRDVTEINPN-AIMVVKSTVPVGFTKTIKEHLGINN------IIFSPEFLREGRALYDNLHPSRIIIGECSERAERLAVLFQEGAIKQNIP---VLFTDSTEAEAIKLFSNTYLAMRVAFFN 216          
The following BLAST results are available for this feature:
BLAST of CF836616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
WECC_YERPE2.898e-1229.71UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersin... [more]
UDG_ECO113.785e-1229.06UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
UDG8_ECOLX6.456e-1229.31UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]
UDG_ECO578.432e-1229.61UDP-glucose 6-dehydrogenase OS=Escherichia coli O1... [more]
UDG_ECOLI1.438e-1129.61UDP-glucose 6-dehydrogenase OS=Escherichia coli (s... [more]
UDG_SHIFL2.453e-1129.61Putative UDP-glucose 6-dehydrogenase OS=Shigella f... [more]
UDG_ECOL62.453e-1129.61UDP-glucose 6-dehydrogenase OS=Escherichia coli O6... [more]
UDG5_ECOLX3.204e-1127.39UDP-glucose 6-dehydrogenase OS=Escherichia coli GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836616 ID=CF836616; Name=CF836616; organism=Citrus sinensis; type=EST; length=743bp
TTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGTAAAGGAAAAT
GGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGGCCGACAATGG
CAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTTGATATC
TCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCATCTATGA
GCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACCTGTTCT
TCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTCTTTGTT
TCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTGGCAAAGCTGC
AGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCCGATGTGTCAA
AGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGTAAAAACTGCT
GAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAATCAAATTCCA
GATCCTTTCAAACCCGGAGTTTCTTGCTGAGGGAACTGCAATACAGGATC
TTTTTAACCCAGATCGGGTCCTTATCGGTGGTAGAGAAACGCCAGAAGGC
CAGAAAGCCGTCAAAGCCTTGAAGGATGTGTATGCACACTGGGTCCCAGA
AGACCGAATTTTGACCACCAACCTCTGGTCTGCAAAGCTTTCGAAGCTTG
CAGCCAATGCTTTCTTGGCACAGAGGATCTCATCTGTTAATGC
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