CF836620

Overview
NameCF836620
Unique NameCF836620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = -2
Query:  371 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 628
            +LV+VDF A WCGPC+ IAPF  E +K    ++F+KVDVDE+  V     + +MPTF   K G  VD ++G+    L+Q I K+ A
Sbjct:   19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 42/97 (43.30%), Postives = 67/97 (69.07%), Query Frame = -2
Query:  374 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 661
            N QL K++   +LVV+DF A+WCGPC+ I+P LAEL+ +  + V+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  G+  + L+  I  ++
Sbjct:   12 NGQLTKASG--KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLEDVIKANI 106          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 39/93 (41.94%), Postives = 63/93 (67.74%), Query Frame = -2
Query:  374 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 649
            Q +  + +LVV+DF A+WCGPC+ I+P L EL+ +   NV+ LKVDVDE + +A ++ + +MPTF+FLK G  V++  G+  + L+  I  ++
Sbjct:   22 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKANI 114          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  380 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 670
            E +   L+++ E  +LV VDF+A+WCGPCR I PF   L+ K  +V+FL+VD D  + V  + A+  +PTF F K+ + VD++ G+ KE+L+  IA+
Sbjct:  457 EDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = -2
Query:  377 QLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 628
            +LVV+DF A WCGPC+ IAP L ELA +  + V+ LKV+VDE + +  ++ V +MPTF+F+K G +++  VG   ++L + + KH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  374 EQLQKSNETK------QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHL 658
            +Q+  S+E K      +LVVVDF A+WCGPC+ IAP   + +    +  F+KVDVD+L  +A +  V AMP+F   K G+ ++++VG+   +L+ +I  +L
Sbjct:    3 KQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKANL 103          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 34/98 (34.69%), Postives = 61/98 (62.24%), Query Frame = -2
Query:  371 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 658
            ++  K   + +++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VG+    L+  + K LA
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = -2
Query:  377 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 625
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 36/101 (35.64%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  359 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATASA 661
            N  L++S +  +L+++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V G+ ++ + + I +H +   A
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHYSPTPA 112          
BLAST of CF836620 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -2
Query:  386 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGSKKEELQQTI 622
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++G+    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
The following BLAST results are available for this feature:
BLAST of CF836620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THIO_PLAF79.190e-1645.35Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO2_DROYA9.190e-1643.30Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_DROME1.200e-1541.94Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
TXND2_HUMAN2.047e-1542.27Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
THIOT_DROME3.492e-1544.71Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TRX1_SCHPO5.957e-1538.61Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_COPCM7.780e-1534.69Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_CHLTR7.780e-1545.24Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
NGLY1_CAEEL7.780e-1535.64Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRX3_YEAST2.956e-1441.77Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_03E14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836620 ID=CF836620; Name=CF836620; organism=Citrus sinensis; type=EST; length=725bp
CGGCGCTCAAAACAGTGGATCCCCGGGCTGCAGGTTTTTTTTTTACCATT
TAGAAGTATGGGACAAGAAGCTGTCATGCATGTCTTCTCTTAAACCAGGA
ACACACTCAACAAAATATGAGTCACTCTCAATATCAAAATTAGGTTCAAC
AACAAAGAACGATCTACCCCAAATATGAAATTAAATTATTGTAAAGACCA
CAGTATGAGCTTCATAGAACAGTAAATTACGGAATATTCAAACACACAAA
CAAACACAATCCCATAACCACTCTAATAAGTAAATTACAGACTGATAGCA
TATATTGAGGTCTATAGCCTCTAAAGCCAAAAGGCAGGAGGATAGTTATA
ACTTATTAGGCAGAGGCAGTTGCCAGATGCTTGGCAATAGTCTGCTGCAG
TTCCTCTTTCTTTGATCCAACCACCTTGTCCACAATCTTCCCCTCTTTCA
GGAACATGAAAGTTGGCATGGCCTCCACTGCCCAGTCAGTGGCAACACTC
TTCAGTTCATCCACATCAACCTTCAGAAACAGGACATTAGGCAGTTTCTT
GGCCAGCTCTGCCAAGAAAGGAGCAATGAAACGGCATGGTCCGCACCACG
AAGCAGTGAAATCAACAACAACCAGCTGTTTGGTTTCATTGCTCTTCTGG
AGCTGCTCGTTCCAGGCCTCAACGGTGTGGCACCCGATGACTTGTCCCTC
TTCTGCTGCTGCCATTTCTGCTTTC
back to top