CF836621

Overview
NameCF836621
Unique NameCF836621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.514e-46
Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.514e-46
Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKVVGV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 84/166 (50.60%), Postives = 122/166 (73.49%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA VST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ N+Y  +TG
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNIYKRMTG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 5.610e-44
Identity = 81/166 (48.80%), Postives = 119/166 (71.69%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  + G
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDIYKRMMG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.327e-44
Identity = 81/166 (48.80%), Postives = 120/166 (72.29%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDATTHFE+T  D+ ++Y  +TG
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.528e-41
Identity = 80/166 (48.19%), Postives = 115/166 (69.28%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            ++G  +GV S  + AK K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DAT+HFE+   DV ++Y  +TG
Sbjct:  261 DDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTG 426          
BLAST of CF836621 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.439e-39
Identity = 78/167 (46.71%), Postives = 113/167 (67.66%), Query Frame = -2
Query:  308 EEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 805
            + GK  GV ++  T K   V+ DP+Y P K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S SYDA++HFES   DV ++Y  +TG
Sbjct:  271 DTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437          
The following BLAST results are available for this feature:
BLAST of CF836621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_RAT3.514e-4650.60Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE3.514e-4650.60Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_PONAB5.994e-4650.60Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_BOVIN5.610e-4448.80Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG7.327e-4448.80Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDI1_SCHPO1.528e-4148.19Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST2.439e-3946.71Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03E15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836621 ID=CF836621; Name=CF836621; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTAGCTGAAAAATTTAAGATATAATTTAAGCAAATTAA
AGATGCATGTTTGAAATCTACACATTAGTTCCCACGGCGAACAATTAAAA
CAAGATTCCATTACATAATAATAATAATAAAATCACCAACTATGAGAAAC
AGAAACCATGACAAAGTCCAAGTGTCCAACCCCCACATTCTTTCGAGCTT
TATCCCACTGACGGCATTACATGCGCAAACATGAACGGGGAGTTGCAGAT
TCCTCATTCTTCTGCAGCACTGGCAGCACTTAAATCCACACTGAGGTCAA
GAACCTTTCCGGTTATCATGGTATACATGTTCAGTACATCCGTGACAGTT
GACTCAAAGTGTGTTGTGGCATCATAGCTCGTTGAGATAAAGCAATTGTC
CAAAGAAGGTTCATTAACTGGTTCATATCTGTCATATATATCATAGAATA
TTTCATCGACTGGACCCAAAAGATCAATTCCAGGCTTAAGTTCAGTCTGT
GGATGATCAGTCTCTGCCTCAGTCGATACGAATGCAATGAATTTGCCCTT
TGGAGCAACATTGTGGGAGTAGGAACAACAGAAGAGGTACATGTCTGATC
TACGACCCAACTGTTTTTGCGGAAGGATAACCTGCACTGAATGGGAATCA
TTGGTGTTTGGGATTGGGTGGCTCATAATAGCGATTGCCCTAGCAACCCT
GCCAACCTTCCTCACCTTGTTGGGCAAATAGGAAGGATCACAAACAACTT
TCTTGCACTTTGCAGTTTCCCCTTCTGACGTGACACCGACTACTTTACCT
TCTTCA
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