CF836632

Overview
NameCF836632
Unique NameCF836632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter sulfurreducens GN=ispF PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.183e-39
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = -2
Query:  185 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 652
            R+GHG+D+HRL  G  LI+GG+++PHE G   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L    G+ +GNLDAT++ QRPK++P+   +R +++  L ADP  VN+KA T E++   G    IAA+ V+L+ +K
Sbjct:    2 RIGHGYDVHRLVAGRKLIVGGVDIPHELGLLGHSDADVLLHAISDAILGALALGDIGKHFPDTDPRYKGADSRALLRHVMELATRKGFHLGNLDATIVAQRPKMAPHIPLMREHIAADLMADPDRVNVKATTTEELGFAGRGEGIAAYAVVLMEEK 157          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACC4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispF PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.183e-39
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWGFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispF PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.018e-39
Identity = 77/157 (49.04%), Postives = 109/157 (69.43%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+D  +K A S++ +K+   L+ + GYE+ NLD T+I Q+PK++P+ E ++ N++ LL  + + VN+KA T EK+   G    IAA  V+LL KK
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVRIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGKHFPDTDECYKDADSALLLKQVWELVKQQGYELANLDCTIIAQKPKMAPHIEQMKENIANLLEGELSQVNVKATTTEKLGFTGREEGIAAQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.442e-39
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = -2
Query:  185 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 661
            +PFRVG GFD+H L  G PLIIGG+ + H  G   HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+  +D AG+++ N+DAT+  Q PK+ P+   +  N++  LG    +VN+KAKT+E +  LG    IAA  V LL ++
Sbjct:    3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQAPKIGPHAPAMVANIAADLGIAHDLVNIKAKTNEGLGYLGRKEGIAATVVTLLARQ 161          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_BACCN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=ispF PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.442e-39
Identity = 77/157 (49.04%), Postives = 106/157 (67.52%), Query Frame = -2
Query:  185 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 655
            FR+G GFD+H    G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.667e-39
Identity = 73/153 (47.71%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  194 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILL 652
            R+GHG+D+H  + G  +++GG+ +PH +   AHSDGDVL+H + DA+LGA  L DIG+ FPD+DP +KGA S V ++  V L+ E GY +GN+DAT+I Q PK++P+ E +R NL++ LG     VN+KA T E++   G    IAAH V L+
Sbjct:    5 RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHFPDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLGVALECVNVKATTTERLGFAGREEGIAAHAVALI 157          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_RALPJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia pickettii (strain 12J) GN=ispF PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.001e-38
Identity = 76/158 (48.10%), Postives = 107/158 (67.72%), Query Frame = -2
Query:  188 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 661
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + +AGY +GN+DAT+I Q+PKL+P+   +  NL+E LG  P   N+KAKT+EK+   G+   I A  V+L+ +
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVHKAGYAVGNVDATVIAQKPKLAPHVPGMVANLAEDLGIAPERCNVKAKTNEKLGFEGKEEGIVAQAVVLIYR 161          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_PELCD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispF PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.001e-38
Identity = 76/155 (49.03%), Postives = 106/155 (68.39%), Query Frame = -2
Query:  188 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 652
            R+GHG+D+H+L     LI+GG+++PH  G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KG  S   + E +RL +  GY +GNLDAT+I QRPKL+P+   +R N++E  G D + +N+KA T E++   G    I++H V+LL K
Sbjct:    3 RIGHGYDVHQLVAERKLILGGVDIPHTLGLLGHSDADVLLHAICDAILGALGEGDIGKHFPDTDPAYKGISSIKLLHEVMRLAETKGYRLGNLDATIIAQRPKLAPFIGNMRENIAEACGTDVSRINVKATTTEQLGFEGRGEGISSHAVVLLNK 157          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.001e-38
Identity = 75/156 (48.08%), Postives = 109/156 (69.87%), Query Frame = -2
Query:  185 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 652
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q P+L+PY E +R++L+  LG  P  VN+KAKT E++  LG    IAA  V LL  +
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSPDRVNVKAKTSERLGHLGRGEGIAADAVCLLQSR 159          
BLAST of CF836632 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.708e-38
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = -2
Query:  185 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 652
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ QRPKL+P+   +R N++  L AD   +N+KA T E++   G    IAA+TV+LL +K
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKADADRINVKATTTEELGFAGRGEGIAAYTVVLLERK 157          
The following BLAST results are available for this feature:
BLAST of CF836632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_GEOSL1.183e-3948.722-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC41.183e-3949.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOSW2.018e-3949.042-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORA13.442e-3950.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCN3.442e-3949.042-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THISH7.667e-3947.712-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALPJ1.001e-3848.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELCD1.001e-3849.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LARHH1.001e-3848.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR1.708e-3849.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03F01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836632 ID=CF836632; Name=CF836632; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTGAGGCAGCTAAAGACCTTGCCATTACTGAAGCATT
GTTCAAGTATGAAACAAAACCTATCATTGGAAATCTATACCAAGTAAAAA
GTCTTTGTAAGCAGAATACAAATACAACAATGATAATAGGATACAACTGC
TACATTTAAGACAATTCCCAAATCGTTTATTTTACTTCTTCATGAGAAGG
ATCACAGTGTGAGCTGCAATACTTCGATTTTCACCAAGGCTATCAACTTT
TTCATGAGTTTTCGCTTTCAGATTTACAACGGTGGGGTCTGCTCCTAGCA
GTTCAGACAAGTTGGTTCGGATAGTCTCCTTGTATGGGCTCAATTTTGGT
CTTTGAAGAATCAGCGTGGCATCCAAGTTGCCAATCTCATAGCCGGCCTC
ATCCATGAGTCTCACAGCTTCTTTGATAAAAACAGAGGATGGTGCACCCT
TCCACTTAGGATCAGAATCAGGAAATATCTGACCAATATCAGGAAGACCC
AATGCTCCCAAAATTGCATCCACAACACAGTGAAGCAAAACATCACCGTC
AGAGTGAGCCTCGCAGCCTCTCTCGTGGGGAACATTGATTCCACCGATGA
TCAGAGGGTAGCCAGGCTCCAATCTATGAAGATCAAACCCGTGGCCCACA
CGAAAAGGCAGTGATTTTGATTTGGACGGTTGGATCGAAGCCGATGACTC
TTTAACTTCGATGGAAGAAGTGGCTGCGGCTGAAACTGAAATACGAGGCA
GCGACGTTGACTGTGTTGTGCGGAGATGTTTGGCGGTTAAGCTACGAGGC
TTCAAACTCAACAGAGGAGGACATAGTGGCTTATTCGTAATTTTCCTG
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