CF836723

Overview
NameCF836723
Unique NameCF836723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836723 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 62/189 (32.80%), Postives = 78/189 (41.27%), Query Frame = 3
Query:  234 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSM 710
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 237          
BLAST of CF836723 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 62/189 (32.80%), Postives = 79/189 (41.80%), Query Frame = 3
Query:  234 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSM 710
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242          
The following BLAST results are available for this feature:
BLAST of CF836723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4B_SOLLC3.179e-1332.80Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL4.152e-1332.80Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836723 ID=CF836723; Name=CF836723; organism=Citrus sinensis; type=EST; length=710bp
CTCGAACACTAGCGCTTACCAACAACTCTGATCATTGTAAAATGGCAACC
TCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGC
CCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAA
CCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGA
GTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGG
TGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACC
CAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGG
GCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAA
CGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCT
TCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCT
CAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTAT
GTTCTCCATG
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