CF836725

Overview
NameCF836725
Unique NameCF836725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 6.105e-56
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    +++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.776e-55
Identity = 102/190 (53.68%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQ+ +LR +AEK  E+++    E++
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            +G+  + VV+D R H+LGRLASV+AK LL G KV VVRCEE+ +SG   R K+K++ +LRKR N  P+ GP HFRAP++I ++ +RGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRLS EVGW+Y D IK LE+KRK + +V  +  ++L KL VKA +   +   P  +II    Y
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.191e-51
Identity = 102/204 (50.00%), Postives = 133/204 (65.20%), Query Frame = 2
Query:   56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            +G   K +V+D R H+LGRLA+V+AK LL G KVVVVRCE++ ISG   R K+K+M FLRKR N  P+ GP HFRAP+KILW+T+RGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRLS EVGW Y + +++LE KRK +A  +VAYER+  L K+   A     +   P   +I    Y
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERK--LKKITKDAGAKVSKATAPFTAVIQSYGY 203          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.654e-51
Identity = 97/202 (48.02%), Postives = 130/202 (64.36%), Query Frame = 2
Query:   56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            +G   K +V+D R H+LGRLA+V+AK LL G KVVVVRCE+I ISG   R K+K+M FLRKR N  P+ GP HFRAP+KILW+T+RGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRLS EVGW Y D +++LE KRK ++       K+L ++  ++ +   +   P   +I    Y
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAKTTAPFTAVIQSYGY 203          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.528e-51
Identity = 96/181 (53.04%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 616
            VV+D + H+LGRLAS++AK+LLNGQK+VVVRCE + ISG   R K+KY  +LRK     P+ G P HFRAP++I ++ +RGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRLSSEVGW Y D +  LE++RK +    YER+K  A+   +A+K+A+
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.528e-51
Identity = 96/182 (52.75%), Postives = 125/182 (68.68%), Query Frame = 2
Query:  101 MLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646
            +LGRLA+++A E+L G KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRL+ EVGW Y      LE+KRKE+A++ Y ++K + KL   AEK  E  +     ++
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.317e-50
Identity = 96/201 (47.76%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   59 GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661
            G+  + +++D ++H+LGRLAS++AK+LL G KVVV+R EEI ISG   R K+KYM FLRKR N  P+ G  H+RAP KI WRT+RGM+PHKT            YEGVPA Y KTK +  P A +  RLQ   K+C++GRLS EVGW + D + +LE KRK +    +E++K++ KL V+A+K A  ++    +II  + Y
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201          
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48
Identity = 96/190 (50.53%), Postives = 128/190 (67.37%), Query Frame = 2
Query:   71 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLE 640
            K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG   R K+KY+ +LRK     PS G  HFRAP++I  + +RGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++   Y+ +    K ++ + KAA    G   E
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQK-KIASAKAASSVNGKLAE 194          
The following BLAST results are available for this feature:
BLAST of CF836725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL13A_MACFA6.105e-5653.1660S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_RAT1.776e-5553.6860S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE6.750e-5553.1660S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_DROME6.985e-5248.0260S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CHOPR1.191e-5150.0060S ribosomal protein L13a OS=Choristoneura parall... [more]
RL13A_SPOFR2.654e-5148.0260S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL16_NEUCR4.528e-5153.0460S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_SALTR4.528e-5152.7560S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_CAEEL1.317e-5047.7660S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL16A_SCHPO1.233e-4850.5360S ribosomal protein L16-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836725 ID=CF836725; Name=CF836725; organism=Citrus sinensis; type=EST; length=673bp
TTTTTCACTTCACCACTCCAGTGAGCGCGCCGTTTGCACGAAAATGGTGT
CAGGTTCAGGGATCTGCGCGAAAAGAGTGGTGGTGGACGCCAGGCACCAC
ATGCTCGGCCGCCTTGCCTCCGTTTTGGCCAAGGAGCTCTTGAACGGCCA
GAAGGTCGTCGTCGTCCGGTGCGAGGAGATTTGTATATCAGGTGGGCTTG
TTAGGCAGAAGATGAAGTACATGAGGTTCTTGAGAAAGAGGATGAACACT
AAGCCTTCTCATGGTCCCATCCATTTTCGAGCTCCTGCTAAGATCCTTTG
GCGTACCATCCGTGGGATGATTCCCCACAAGACTAAGCGTGGAGCTGCAG
CCCTTGCTCGTTTGAAGGCTTATGAAGGAGTTCCTGCTCCATATGACAAG
ACAAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTTCAAAA
AGGACACAAGTACTGCTTGTTGGGCAGGCTTTCATCTGAAGTAGGATGGA
ACTATTATGACACCATTAAGGAGCTTGAGAAGAAGAGAAAGGAGAGGGCC
CAGGTAGCTTATGAGAGGAGGAAGCAGTTGGCTAAATTGAGGGTCAAAGC
TGAGAAGGCTGCCGAGGAGAGGCTTGGTCCCCAGCTAGAAATCATTGCTC
CCATCAAGTATTGATGATGATGA
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