CF836725
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 217.238 bits (552), Expect = 6.105e-56 Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 2 Query: 77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646 +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ +++ Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 215.698 bits (548), Expect = 1.776e-55 Identity = 102/190 (53.68%), Postives = 137/190 (72.11%), Query Frame = 2 Query: 77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646 +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ E++ Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55 Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 2 Query: 77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646 +V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQ+ +LR +AEK E+++ E++ Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 6.985e-52 Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 2 Query: 56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661 +G+ + VV+D R H+LGRLASV+AK LL G KV VVRCEE+ +SG R K+K++ +LRKR N P+ GP HFRAP++I ++ +RGMIPHKT ++G+P+PYDK +R+V+P A++VL L+ KYC +GRLS EVGW+Y D IK LE+KRK + +V + ++L KL VKA + + P +II Y Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.191e-51 Identity = 102/204 (50.00%), Postives = 133/204 (65.20%), Query Frame = 2 Query: 56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661 +G K +V+D R H+LGRLA+V+AK LL G KVVVVRCE++ ISG R K+K+M FLRKR N P+ GP HFRAP+KILW+T+RGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRLS EVGW Y + +++LE KRK +A +VAYER+ L K+ A + P +I Y Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERK--LKKITKDAGAKVSKATAPFTAVIQSYGY 203
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.654e-51 Identity = 97/202 (48.02%), Postives = 130/202 (64.36%), Query Frame = 2 Query: 56 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661 +G K +V+D R H+LGRLA+V+AK LL G KVVVVRCE+I ISG R K+K+M FLRKR N P+ GP HFRAP+KILW+T+RGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRLS EVGW Y D +++LE KRK ++ K+L ++ ++ + + P +I Y Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAKTTAPFTAVIQSYGY 203
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.528e-51 Identity = 96/181 (53.04%), Postives = 128/181 (70.72%), Query Frame = 2 Query: 77 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 616 VV+D + H+LGRLAS++AK+LLNGQK+VVVRCE + ISG R K+KY +LRK P+ G P HFRAP++I ++ +RGMIPHKT +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRLSSEVGW Y D + LE++RK + YER+K A+ +A+K+A+ Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.528e-51 Identity = 96/182 (52.75%), Postives = 125/182 (68.68%), Query Frame = 2 Query: 101 MLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 646 +LGRLA+++A E+L G KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++GVP PYDK KRMV+P ALK++RL+ K+ LLGRL+ EVGW Y LE+KRKE+A++ Y ++K + KL AEK E + ++ Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.317e-50 Identity = 96/201 (47.76%), Postives = 133/201 (66.17%), Query Frame = 2 Query: 59 GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 661 G+ + +++D ++H+LGRLAS++AK+LL G KVVV+R EEI ISG R K+KYM FLRKR N P+ G H+RAP KI WRT+RGM+PHKT YEGVPA Y KTK + P A + RLQ K+C++GRLS EVGW + D + +LE KRK + +E++K++ KL V+A+K A ++ +II + Y Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
BLAST of CF836725 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48 Identity = 96/190 (50.53%), Postives = 128/190 (67.37%), Query Frame = 2 Query: 71 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLE 640 K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK PS G HFRAP++I + +RGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++ Y+ + K ++ + KAA G E Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQK-KIASAKAASSVNGKLAE 194 The following BLAST results are available for this feature:
BLAST of CF836725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836725 ID=CF836725; Name=CF836725; organism=Citrus sinensis; type=EST; length=673bpback to top |