CF836726

Overview
NameCF836726
Unique NameCF836726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CF836726 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 117/136 (86.03%), Postives = 120/136 (88.24%), Query Frame = -1 
Query:  111 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 518
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CF836726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H33_XENTR2.137e-5886.03Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA2.137e-5886.03Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_TRIPS2.137e-5886.03Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H33_SPISO2.137e-5886.03Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT2.137e-5886.03Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]
H33_RABIT2.137e-5886.03Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=... [more]
H33_PIG2.137e-5886.03Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3[more]
H33_MOUSE2.137e-5886.03Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2[more]
H33_HUMAN2.137e-5886.03Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2[more]
H33_DROME2.137e-5886.03Histone H3.3 OS=Drosophila melanogaster GN=His3.3A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836726 ID=CF836726; Name=CF836726; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTAGCAGAGCAACATTTTTTTTCCATTTCAATTGCCAT
CAAATAAAATCGAGATTCAACATTACAGTCCAAAGATTTACAATCATAAG
AACTCAATTAAGCTCTCTCGCCTCTAATTCTCCTAGCGAGCTGAATATCC
TTGGGCATAATAGTAACTCTCTTGGCATGAATGGCGCAGAGGTTAGTATC
TTCAAAGAGACCGACTAGATAAGCCTCGGCAGCTTCTTGAAGAGCCGCGA
CGGCGCTGCTTTGGAACCTCAGATCGGTCTTAAAGTCCTGAGCGATTTCC
CTAACGAGTCTTTGGAACGGAAGCTTCCTGATCAAAAGCTCAGTGCTCTT
CTGGTACTTCCTGATCTCTCTCAGAGCAACGGTTCCTGGCCTGAAACGGT
GAGGCTTCTTCACTCCTCCCGTCGCCGGAGCCGACTTACGAGCCGCCTTT
GTTGCAAGCTGCTTGCGTGGCGCCTTTCCTCCGGTTGATTTCCTAGCGGT
TTGCTTTGTGCGGGCCATTTGTGAGAGTAGAAGACGAAAATGAGTGTTTG
TTTCTTGAGAAAGTGAAACAAA
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