CF836744

Overview
NameCF836744
Unique NameCF836744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16
Identity = 50/155 (32.26%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  233 EKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN---RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDN--ESLAPIFTPP 679
            ++ +E ATS +LE  D  +NL++ D+I ++ +   D ++ +KKRI  K+P +Q   L L +T VKN    F  E+A+   +D +  L+  P T+  N   +NK L +I++W  +      L    E Y+SL+  G  FP ++N   S+     PP
Sbjct:   14 DEQIERATSSSLE--DMPLNLEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSWATAAEGRMNLGYINEVYRSLQREGYHFPPKENIASSMLDSSAPP 166          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_ASPCL (Vacuolar protein sorting-associated protein 27 OS=Aspergillus clavatus GN=vps27 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 50/151 (33.11%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNES 655
            F   +P+++ VE ATS +LE  D A+NL++ D+I ++ +   + +R +K+R+  ++P +Q   L L +T VKN    F +E+A+   LD MV L+      +N+  + K L +I+ W  +      L    ETY+ L+S G RFP +   S
Sbjct:    5 FSSSSPLDEQVERATSSSLE--DIALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGTHFLAEIASREYLDNMVSLLTAEGAPLNSDVKEKMLELIQDWAMAAQGRMDLNYLGETYRKLQSEGFRFPPKSEIS 153          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_ASPFU (Vacuolar protein sorting-associated protein 27 OS=Aspergillus fumigatus GN=vps27 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 47/151 (31.13%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNES 655
            F   +P+++ VE ATS +LE  D A+NL++ D+I ++ +   + +R +K+R+  ++P +Q   L L +T VKN    F +E+A+   +D +V L+      +N   + K L +I+ W  +      L    ETY+ L++ G RFP ++  S
Sbjct:    5 FSSTSPLDEQVERATSSSLE--DMALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQGRMDLNYLGETYRKLQNEGFRFPPKNEIS 153          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: TOM1_DICDI (Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 47/162 (29.01%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  230 VEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL 715
            V +LV+ AT+E L + DW   L + D++N + I +  ++R + K++  +S R+  LAL L +++++NC       A      E+ +LI + +T +N + K L ++E+WG +      +P + ETY  ++  G +FP + ++  API     S ++  V  T+
Sbjct:    2 VTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRS-RVILLALELADSLLQNCHCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAFQARHDVPGFYETYSFIKRSGYKFPPKPSD--APILNFNNSPAKRTVSTTI 160          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: STAM2_MOUSE (Signal transducing adapter molecule 2 OS=Mus musculus GN=Stam2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-14
Identity = 51/194 (26.29%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  224 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSI 802
            NP E+ VE AT+E     DW++ +D+CD + +    + D ++ I KR+  K P +   AL LL   V NC K F  EV +     E+  +I +            +M+E W E   +     +   T KS++  G+ FP   ++++A       S+++ + D  +A+ I+  ++ Q     +TK  +  A + +
Sbjct:    7 NPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVE-WSEEFQKDPQFSLISATIKSMKEEGVTFPSAGSQTVAAAAKNGTSLNKNKEDEDIAKAIELSLQEQKQQYTETKALYPPAESQL 199          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: STAM2_CHICK (Signal transducing adapter molecule 2 OS=Gallus gallus GN=STAM2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 2
Query:  224 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVA 790
            NP E+ VE AT+E     DW + +D+CD + +    + D ++ I +R+  K P +   AL LL   V NC + F  EV +     E   +I+     V+ + K L M+E W E   +     +   T KSL+  G+ FP   +++         S+S+ + D  + + I+  ++ Q   + +TK  +  A
Sbjct:    7 NPFEQDVEKATNEHNNSEDWGLIMDICDKVGSTPNGAKDCLKAIMRRVNHKVPHVALQALTLLGACVSNCGRIFHLEVCSRDFATEARGIINKAHGKVSEKLKTL-MVE-WSEEFQKDPQCSLISATIKSLKEEGVTFPAAGSQATTNAAKNGSSLSKNKEDEDIRKAIELSLQEQKQQQMETKSLYPSA 194          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_ASPTN (Vacuolar protein sorting-associated protein 27 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=vps27 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.199e-14
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            F   +P+++ VE ATS +LE  D A+NL++ D+I ++ +   + +R +K+R+  K+P +Q   L L +T VKN    F +E+A+   +D +V L+      +N   + K L +I+ W  +      L    +TY+ L+  G RFP
Sbjct:    5 FSSASPLDEQVERATSSSLE--DIALNLEISDLIRSKSVQPKEAMRSLKRRLENKNPNVQLATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKTEGLQLNTEVKEKMLELIQDWAMAAQGRMDLSYVGQTYQRLQEEGFRFP 147          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_EMENI (Vacuolar protein sorting-associated protein 27 OS=Emericella nidulans GN=vps27 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 46/145 (31.72%), Postives = 81/145 (55.86%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            F   +P+++ +E AT+ +LE  D A+NL++ D+I ++ +   D +R +K+R+  K+P IQ   L L +T VKN    F +E+A+   +D +V L+      +N+  R+  L +I+ W  +      L    ETY+ L+  G +FP
Sbjct:    5 FSSASPLDEQIERATASSLE--DIALNLEISDLIRSKGVQPKDAMRSLKRRLENKNPNIQIATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKAEGVPLNSSVRDLMLALIQDWAMAAQGRMDLSYLGETYRKLQMEGFQFP 147          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_NEOFI (Vacuolar protein sorting-associated protein 27 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=vps27 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.457e-14
Identity = 47/151 (31.13%), Postives = 83/151 (54.97%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNES 655
            F   + +++ VE ATS +LE  D A+NL++ D+I ++ +   + +R +K+R+  ++P +Q   L L +T VKN    F +E+A+   +D +V L+      +N   + K L +I+ W  +      L    ETY+ L+S G RFP ++  S
Sbjct:    5 FSSTSLLDEQVERATSSSLE--DIALNLEISDLIRSKSVQPKEAMRSLKRRLENRNPNVQIATLKLTDTCVKNGGSHFLAEIASREFMDNLVSLLTTEGAPLNTDVKEKMLELIQDWAMAAQGRMDLNYLGETYRRLQSEGFRFPPKNEIS 153          
BLAST of CF836744 vs. ExPASy Swiss-Prot
Match: VPS27_ASPNC (Vacuolar protein sorting-associated protein 27 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=vps27 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  212 FQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 637
            F   + +E  VE AT+ +LE  D A+NL++ D+I ++ +   D +R +K+R+  K+P IQ   L L +T VKN    F +E+A+   +D +V L+      +N+  + K L +I+ W  +      L    ETY+ L+  G RFP
Sbjct:    5 FSSTSTIEDQVEKATASSLE--DIALNLEISDLIRSKGVQPKDAMRCLKRRLENKNPNIQLATLKLTDTCVKNGGTHFLAEIASREFMDNLVSLLKTEGAPLNSDVKAKMLELIQDWAMAAQGRMDLSYVGETYRRLQDEGFRFP 147          
The following BLAST results are available for this feature:
BLAST of CF836744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
VPS27_PHANO9.945e-1632.26Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPCL1.299e-1533.11Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPFU3.779e-1531.13Vacuolar protein sorting-associated protein 27 OS=... [more]
TOM1_DICDI6.446e-1529.01Target of Myb protein 1 OS=Dictyostelium discoideu... [more]
STAM2_MOUSE1.436e-1426.29Signal transducing adapter molecule 2 OS=Mus muscu... [more]
STAM2_CHICK2.449e-1427.37Signal transducing adapter molecule 2 OS=Gallus ga... [more]
VPS27_ASPTN3.199e-1431.72Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_EMENI4.178e-1431.72Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_NEOFI5.457e-1431.13Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_ASPNC7.127e-1433.10Vacuolar protein sorting-associated protein 27 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_03H21_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa03H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836744 ID=CF836744; Name=CF836744; organism=Citrus sinensis; type=EST; length=892bp
GAAGTTCAATAACTTAACCGAGTCGTTGGGCGTCGTCTCAACTCCCATCT
CTATTTTCAGTTTTAAAGGATTTTAAACCGTTGCAAAGATGAGTGATAAT
TTGATGGAGAAAGTTAGTGCCTTTGGTGAACGCCTCAAGATTGGAGGGGC
TGAAGTGGGTCGTAAAATGAGTGAAGGAATGAGCCAAATGAGCTTCAAGA
TGAAGGAGCTCTTCCAAGGCCCAAACCCAGTTGAAAAACTTGTTGAGGAT
GCCACCTCTGAGGCCCTTGAGGAGCCTGATTGGGCCATGAATCTCGATCT
CTGTGACATGATCAATACCGAGAAAATCAGCAGTGTTGATTTGATCCGTG
GCATAAAGAAAAGGATCATGTTGAAGAGCCCTAGGATTCAGTATTTGGCC
TTGGTACTGCTTGAAACAGTTGTTAAAAACTGTGAGAAGGCCTTCTCCGA
GGTGGCAGCTGAGAGGGTTCTTGATGAAATGGTCAAGCTGATTGATGATC
CTCAAACTGTTGTCAATAATAGGAACAAGGCTTTGGTGATGATTGAAGCT
TGGGGTGAGTCCACAAGCGAACTTCGATACTTGCCCGTATATGAAGAAAC
ATACAAGAGTTTAAGATCACGGGGCATCCGGTTTCCGGGACGTGACAATG
AGAGCTTGGCGCCTATTTTTACACCTCCTCGTTCAGTTTCAGAAACAGAA
GTGGATGCTACTCTTGCTGAGCAGATTCAGCGTGATATTCGTGGGCAAAG
CTTTACCAAAGAACAAACAAAGGAAGCCTTTGATGTTGCAAGAAACAGTA
TCGAGCTTCTTTCAACTGTTCTATCATCCTCACCCCAACAAGACGCTTTA
CAGGATGACTTGACAACTACACTAGTGCAACAGTGTCGTCAG
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