CF838099

Overview
NameCF838099
Unique NameCF838099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_RAT (ATP synthase subunit gamma, mitochondrial OS=Rattus norvegicus GN=Atp5c1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.079e-18
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  250 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN-VEFDALRIIYSKFHSVVSF 735
            +  R+KS+KNIQKITK+MKMVAA+K    + + + +R       AL          D KK++I+ +SSD+GLCG I+S+  K  K+     +   KE   V +GEK K+IL R       +   ++ + P  +   SV+A ++L +  EFD   II+++F SV+S+
Sbjct:    6 ITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISY 171          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_DINSH (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DFL 12) GN=atpG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.410e-18
Identity = 64/203 (31.53%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  250 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL-------GDTP--------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL 804
            ++NR++SVK+ +KITKAM+MVAA+KLR  Q  AE SR   + F A+L       GD+         T   + +++V +++++GLCGG NS+  K++++  +      K  K + +G+K +  L RD  K     +   +   ++Y   + +A D+L      EFD   I +++F SV+S +PT   ++ P   E +A++   L
Sbjct:    7 LKNRIESVKSTRKITKAMQMVAAAKLRRAQDAAEASRPYTERFNAVLAGLAASVGDSDSGPRLLVGTGSDQTHLLVVMTAERGLCGGFNSSIAKLARAHAEKLVAQGKTVKILTVGKKGREQLKRDLSKHFIGHVDLSEVKRVSYDNAADIAADVLGRFDAGEFDVATIFFNRFQSVISQIPTAQQII-PASFEGDADADATL 208          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_METPB (ATP synthase gamma chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 63/205 (30.73%), Postives = 102/205 (49.76%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGG 798
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN R   +   ++L +               + T   + +++V  + D+GL G  NS+  ++++          K  K + +G+K   +L R  +  I          P++Y   + +ADDIL      EFD   + YS+F SV+S +PT   ++  EL + +  + G
Sbjct:    3 SLKDLRNRITSVKATQKITKAMQMVAAAKLRRAQNAAENGRPYAEKMASVLANLAGNLIGGVGAPRLLSGTGQDRVHLLVVCTGDRGLAGAFNSSIARLARDHANRLMAEGKTVKIMTVGKKGLDVLRRQFRDQIIASRDIRGNKPVDYPFAAEIADDILARFEAGEFDVATLFYSEFRSVISQIPTAQKIIPAELPQTDGAAKG 207          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 61/196 (31.12%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG----------DTPTVDA-----KKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPEL 771
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG          +TP + A     + +++V  ++++GLCG  NS+  ++++   +      K  K + +G+K   IL R+ +  I  +I       L +     + +++L      EFD   + YS+F SV++ +PT   ++  E+
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLAGTGADRVHLLVVCTAERGLCGAFNSSIARLARDHARRLVAEGKTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFENAEAVTENLLNRFEAGEFDIATLFYSRFRSVIAQVPTAQQIIPAEI 198          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.357e-18
Identity = 64/205 (31.22%), Postives = 104/205 (50.73%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAES 792
            S + +RNR+ SVK+ QKIT AMKMVAASKLR  Q +AE  R        +L                 T T   + +++V ++SD+GLCGG NST V+ ++   K  +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+     EFD   +IY+KF S ++ + T   V+  +P +    AE+
Sbjct:    3 SLKDIRNRIGSVKSTQKITSAMKMVAASKLRRAQEQAEAGRPFADRMARMLASLAANVSGATGGPRLMTGTGSDQVHLLVVVTSDRGLCGGFNSTIVREARRTIKRLTGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVIPFAPAVATEPAET 207          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18
Identity = 59/196 (30.10%), Postives = 103/196 (52.55%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD-----TPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPEL 771
            S + +RNR+ SVK  QKITKAM+MVAA+KLR  Q  AEN+R   +   A+LG+     TP  +  +          ++++  ++++GLCG  NS+  ++++   +  +   +  K + +G+K   IL R+ +  I  +I       L +     +A ++L      EFD   + YS+F SV+  +PT   ++  E+
Sbjct:    3 SLKDLRNRIASVKATQKITKAMQMVAAAKLRRAQNAAENARPYAERMAAVLGNLATNLTPGAETPRLLSGTGADRVHLLLVCTAERGLCGAFNSSIARLARDHARRLTAEGRTVKIICVGKKGYDILRREFRDQIVELIELRGVRQLGFDNAETIAQNLLGRFEAGEFDIATLFYSRFRSVIVQIPTAQQIIPAEI 198          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_SILST (ATP synthase gamma chain OS=Silicibacter sp. (strain TM1040) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALL---------GDTP------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI---ELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAES 792
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE++R   + F A++          DT       T   +  ++V +++++GLCGG N+   K+++          K  K + +G+K + +L R+   D+    + +TE+++  + Y     +A DIL      EFD   I YSKF +VV+ +PT   ++  E     AE+
Sbjct:    3 SLKDLKNRISSVKNTRKITKAMQMVAAAKLRRAQEAAEDARPYAERFNAVMAGLAASVGQSDTAPKLLAGTGSDQVQLLVVMTAERGLCGGFNANIAKLARQKVLDLQAAGKTVKILTVGKKGRDVLKREF-GDLFVGHVDLTEVKR--VGYVDAQGIAKDILARFDAGEFDVATIFYSKFQNVVTQIPTAQQIIPAEFDAEGAEA 205          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_PARDP (ATP synthase gamma chain OS=Paracoccus denitrificans (strain Pd 1222) GN=atpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 61/201 (30.35%), Postives = 104/201 (51.74%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREA 786
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R       A++                   T + +++++V ++S++GL GG NS+ VK+++   +      K+   + +G+K +  L R+        +   +   + Y     +AD+IL    N EFD   + Y++F SV+S +PT   V+   + E EA
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPYADRMAAVMAGLTAAAAGSDMAPRLLAGTGEDRRHLLVVMTSERGLAGGFNSSIVKLARLRLQELQAQGKQVSILTVGKKGREQLKREYGDLFVNHVDLSEVKRIGYDNARAIADEILDRFDNGEFDVATLFYNRFESVISQVPTARQVIPAVIEEGEA 203          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_SILPO (ATP synthase gamma chain OS=Silicibacter pomeroyi GN=atpG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 62/199 (31.16%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  250 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP---------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAES 792
            ++NR+ SVK+ +KITKAM+MVAA+KLR  Q  AE +R   + F A++                   T   + +++V +++++GLCGG NS   K+++          K  K + +G+K +  + RD   ++   +       L Y     +A D+L      EFD   I Y+KF +VV+ LPT   ++ P   E E ES
Sbjct:    7 LKNRIASVKSTRKITKAMQMVAAAKLRRAQESAEAARPYAERFNAVMAGLAASVGGSDSAPLLLRGTGSDQVHLLVVMTAERGLCGGFNSNIAKLARVRANELLAKGKTVKILTVGKKGRDAMKRDFAANMVGHVDLSGIKALGYANAQDIARDVLGRFDAGEFDVATIFYAKFQNVVTQLPTAQQII-PAAFEAEGES 204          
BLAST of CF838099 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS5 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 63/202 (31.19%), Postives = 104/202 (51.49%), Query Frame = 1
Query:  238 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGD---------------TPTVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAE 789
            S + ++NR+ SVKN +KITKAM+MVAA+KLR  Q  AE +R   +  TA++                   T   K  ++V +++++GLCGG NS+ V+++++         K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+ P + E E E
Sbjct:    3 SLKDLKNRIGSVKNTRKITKAMQMVAAAKLRRAQEAAEAARPFAERMTAVMTGLAGSVGSSESAPRLLAGTGSDKVQLLVVMTAERGLCGGFNSSIVRLARAHAAKLLAEGKTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDVLDRFDKGEFDVATIFFARFQSVISQIPTAQQVI-PAVFEGEGE 203          
The following BLAST results are available for this feature:
BLAST of CF838099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
ATPG_RAT1.079e-1836.14ATP synthase subunit gamma, mitochondrial OS=Rattu... [more]
ATPG_DINSH1.410e-1831.53ATP synthase gamma chain OS=Dinoroseobacter shibae... [more]
ATPG_METPB2.405e-1830.73ATP synthase gamma chain OS=Methylobacterium popul... [more]
ATPG_METNO2.405e-1831.12ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_RHOCS5.357e-1831.22ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_METS46.996e-1830.10ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_SILST9.137e-1832.04ATP synthase gamma chain OS=Silicibacter sp. (stra... [more]
ATPG_PARDP2.659e-1730.35ATP synthase gamma chain OS=Paracoccus denitrifica... [more]
ATPG_SILPO4.535e-1731.16ATP synthase gamma chain OS=Silicibacter pomeroyi ... [more]
ATPG_RHOS54.535e-1731.19ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_05L22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838099 ID=CF838099; Name=CF838099; organism=Citrus sinensis; type=EST; length=811bp
GTTCGACACCTGAGCTCGCACGACCCAAACAGAACATAAAGCTTTGGATC
TGCAGCGTTCAAAATAAAATATTTCTAGGGTTTCCTACGACGACGGTTCA
TCAGAAAAATGGCGATGGCTGCTCTGAGGCGCGAAGGCCGGCGATTCGCC
ACCCCTCTCATCTCCCCACGTCCAATCGCCGCAATCAGATCCCCTTTCCT
TTCCGAGGAGGATGCCCCTCTGGGAGTCCGGTCTATTTCAACTCAAATTG
TTAGAAACCGGATGAAGAGTGTTAAGAATATTCAGAAAATTACAAAGGCT
ATGAAGATGGTTGCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTGA
AAATTCCCGTGGTCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACTC
CCACTGTTGATGCTAAGAAGAATGTTATTGTGACCATCTCTTCTGACAAA
GGTCTATGTGGTGGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTTT
GCACAAGTTGAATTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTGG
GAGAGAAGGCAAAGGCAATATTAGTACGTGACTCGAAGAAAGATATTGAA
CTCATCATAACTGAGTTACAGAAAAATCCTCTAAATTATACCCAGGTTTC
CGTTCTTGCAGATGATATCTTAAAGAATGTAGAATTTGATGCTTTGAGGA
TTATCTATAGCAAGTTCCATTCTGTGGTCTCCTTTCTGCCGACAATGGCA
ACTGTATTATCGCCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGGGAAA
GCTTGGTGAGC
back to top