CF838121

Overview
NameCF838121
Unique NameCF838121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.895e-35
Identity = 91/242 (37.60%), Postives = 129/242 (53.31%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQKDEYKGVWKHSKSEGHE----DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            E  D S++ RW+ S+  +  G +K S  +  +    D G+   + AK Y+   + D+  S K  T+V+QY V+ + G++CGG Y+K +R         +F  E+PY +MFGPD CG T +VH IL +K    GE     +K   +  SD+LTH+YT IL  DN   + IDGE  Q  +    +D+   L+P K I          WDER  I D + VKPEDW++  P  I D DA KPE W
Sbjct:   22 EFNDASWEKRWVQSKHKDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRGDAD---LADFHGETPYNVMFGPDICGPTRRVHVILNYK----GE--NKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSL--EEDWD--LLPAKKIKDPDAKKPEDWDEREYIDDAEDVKPEDWEK--PEHIPDPDAKKPEDW 248          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.475e-35
Identity = 97/258 (37.60%), Postives = 138/258 (53.49%), Query Frame = 2
Query:  134 LISASDDATILYESYDESFDGRWIVSQ--KDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            L++ +       E +++ +D RW+ S+  KDE   G W ++  + +    D G+   E  + YAI  E  E  S KD T+V Q+ V+ +  L+CGG Y+K L    +G V  K+F  ++PY IMFGPD CG +T KVH IL + N  +       +K      +D+LTHVYT I++PD    ILID  EKQ  +  +  D    L+P K I          W+++  IPDP+  KPE +D D P EI D DA KPE W
Sbjct:   18 LLAIASAKVFFEERFEDGWDKRWVTSEWKKDENLAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYIKLL----SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNNTNN------LIKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWD----LLPAKKIKDPEAKKPEDWEDQEYIPDPEDKKPEGYD-DIPKEITDPDAKKPEDW 259          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.233e-35
Identity = 93/245 (37.96%), Postives = 131/245 (53.47%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQ--KDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            E +++ ++ RW+ S+  KDE   G W ++  + +    D G+   E  + YAI  E  E  S KD T+V Q+ V+ +  L+CGG Y+K L  +      K+F  ++PY IMFGPD CG +T KVH I  + +        H +K      +D+LTHVYT IL+PD    ILID +EKQ  +     D    L+P K I          WD++  IPDP+  KPE +D D P EI D +A KPE W
Sbjct:   31 ERFEDGWEKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGIQTSEDYRFYAISAEFPE-FSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGEVD---QKKFGGDTPYSIMFGPDICGYSTKKVHAIFNYNDTN------HLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWD----LLPAKKIKDPEAKKPEDWDDKEFIPDPEDKKPEGYD-DIPAEITDPEAKKPEDW 260          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.233e-35
Identity = 94/248 (37.90%), Postives = 127/248 (51.21%), Query Frame = 2
Query:  161 ILYESYDESFDGRWIVS---QKDEYKGVWKHSK---SEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            I  E +++ ++ RW+ S   + D   G WKH+    S    D G+   E  + YAI  E  E  S KD T+V Q+ V+ +  L+CGG Y+K L          +F  ++PY IMFGPD CG +T KVH IL +          H +K      +D+LTHVYT +L+PD    ILID  EKQ  +  +  D    L+P K I          WD++  IPDP+  KP  +D D P EI D DA KPE W
Sbjct:   25 IFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVD---QTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTN------HLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWD----LLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGYD-DIPKEIPDTDAKKPEDW 257          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.223e-35
Identity = 91/242 (37.60%), Postives = 129/242 (53.31%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQKDEYKGVWKHSKSEGHE----DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            E  D S++ RW+ S+  +  G +K S  +  +    D G+   + AK Y+   + D+  S K  T+V+QY V+ + G++CGG Y+K +R   A     +F  E+PY +MFGPD CG T +VH IL +K    GE     +K   +  SD+LTH+YT IL  DN   + IDGE  Q  +    +D+   L+P K I          WDER  I D +  KPEDW++  P  I D DA KPE W
Sbjct:   22 EFNDASWEKRWVQSKHKDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMR---ADADLGDFHGETPYNVMFGPDICGPTRRVHVILNYK----GE--NKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSL--EEDWD--LLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEK--PEHIPDPDAKKPEDW 248          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.162e-33
Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 2
Query:  179 DESFDGRWIVSQKD-----EYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            D+S++  W+ S+       ++K       S+  +D GL   E A+ YA+ ++  +P S +   +V+Q+ V+ +  ++CGG YLK     +     K+   E+PY IMFGPD CG  T KVH I  +K         H +K       D  TH+YT I+KPDN   +LID E+ +  +  A  DF    +P K I          WD++  IPDP+  KPEDWD+  P  I D DA KPE W
Sbjct:   29 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDF----LPNKKIKDPEAKKPEDWDDKPTIPDPEDKKPEDWDK--PEHIPDPDATKPEDW 253          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.150e-32
Identity = 91/241 (37.76%), Postives = 124/241 (51.45%), Query Frame = 2
Query:  179 DESFDGRWIVSQKDEYKGVWK--HSKSEGH--EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDN-ESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            D+ ++ RWI S+  +  G W+  H K  G   +D GL   + AK Y+I  + D+  S K  ++V+Q+ V+ +  ++CGG Y+K +    A  V+ E  + E+PY IMFGPD CG  T KVH I  +K+        H +K       D  TH+YT I+  DN   + IDGE+ +     A  DF PP    K I          WDER  I D D  KPEDWD+  P  I D DA KPE W
Sbjct:   27 DDDWEKRWIKSKHKDDFGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSLVIQFSVKHEQDIDCGGGYVKLM----ASDVNLEDSHGETPYHIMFGPDICGPGTKKVHVIFHYKDRN------HMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPP----KKIKDPDAKKPEDWDEREFIDDEDDKKPEDWDK--PEHIPDPDAKKPEDW 251          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.502e-32
Identity = 90/246 (36.59%), Postives = 132/246 (53.66%), Query Frame = 2
Query:  170 ESYDESFDGRWIVS---QKDEYKGVWKHSKSEGHEDY---GLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCGATNKVHFILKHKNPKSGEYIEHHL--KNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            +++D  ++ RW+VS   ++D   G   H+  +   D    G+   E A+ YA+  +     S K   +VLQY V+ +  ++CGG+Y+K L P +       FD ES Y IMFGPD CGA+ +VH IL +K        ++HL  K    V +D+LTH YT ++ PDN  ++L+D +E Q  N   ADD++  L+P K I          W +  +I DP+ VKP   D D P  I D +AVKPE W
Sbjct:   25 DTFDNDWESRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPS-FSNKGKDLVLQYTVKNEQKVDCGGSYIKLL-PSKLD--QSAFDGESEYSIMFGPDVCGASKRVHVILNYKG-------KNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNL--ADDWE--LLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPAGHD-DIPASIVDPEAVKPEDW 254          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.502e-32
Identity = 91/258 (35.27%), Postives = 127/258 (49.22%), Query Frame = 2
Query:  134 LISASDDATILYESYDESFDGRWIVSQ---KDEYKGVWKHSKS----EGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            L+ A+       E++D S+  RW  S     D   G +K +      +   D G+  G  +K +AI   L           V+Q+ V+ +  L+CGG Y+K + P  +     EF  ++PY IMFGPD CG +T KVH IL +K         + +K      +D+LTHVYT ++KPDN  ++LID +E    +     D  PP    KTI          WDER +I DP+  KPE WD D P  I D+DA KPE W
Sbjct:   12 LVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVV-PATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKN------YLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPP----KTIKDPKASKPEDWDEREEIADPEDKKPEGWD-DIPATIADKDAKKPEDW 257          
BLAST of CF838121 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.735e-32
Identity = 93/246 (37.80%), Postives = 129/246 (52.44%), Query Frame = 2
Query:  170 ESYDESFDGRWIVS--QKDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIPEKTIXXXXXXXXXXWDERAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGW 883
            E +++ ++ +W+ S  ++DE   G W  +  + +    D G+   E  + YAI     E  S K  T+V Q+ V+ +  L+CGG Y+K L    +G V  K+F  ++PY IMFGPD CG +T KVH IL       GE   H +K      +D+LTHVYT IL+PD    ILID  EKQ  +     D  PP    K I          W+++  IPDP+  KPE +D D P EI D +A KPE W
Sbjct:   28 ERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPE-FSNKGKTLVFQFSVKHEQKLDCGGGYMKLL----SGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILT-----KGE-TNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPP----KQIKDPEAKKPEDWEDKEYIPDPEDKKPEGYD-DIPKEITDPEAKKPEDW 257          
The following BLAST results are available for this feature:
BLAST of CF838121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_CAEBR1.895e-3537.60Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_PRUAR2.475e-3537.60Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_BETVU3.233e-3537.96Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR1_ARATH3.233e-3537.90Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_CAEEL4.223e-3537.60Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_BOMMO5.162e-3335.27Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_ONCVO1.150e-3237.76Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_DICDI1.502e-3236.59Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR_CHLRE1.502e-3235.27Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_BERST9.735e-3237.80Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838121 ID=CF838121; Name=CF838121; organism=Citrus sinensis; type=EST; length=884bp
CTTGGGTTGATTGATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTC
TCTCTCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCT
CTCCTGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGA
TGATGCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACGGACGAT
GGATCGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAG
AGTGAGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAA
GTACGCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAA
CTGTTGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGT
GGTGCATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAA
GGAGTTCGACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAAT
GTGGTGCAACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAG
AGTGGAGAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTC
TGATAAACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGT
TGAGAATTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCT
GCTGATGATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCC
AGATGACAAGAAGCCTGANGATTGGGATGAGAGGGCAAAGATTCCTGACC
CTGATGCAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATT
GAAGATGAGGATGCTGTGAAACCTGAAGGATGGC
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