CF838123

Overview
NameCF838123
Unique NameCF838123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.941e-24
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 188
            KF DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFGQV+EGM +V+ +E
Sbjct:  173 KFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.759e-24
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 251
            KF DENF  KHTG G+LSMANAGP TNGSQFF+   KT WLDG H VFGQ+VEG  V++ +E+ G+ SG     V I DCG++
Sbjct:   92 KFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.013e-23
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 251
            KF DENF  KH   G LSMAN+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  217 KFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.728e-23
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 251
            +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V+I DCG++
Sbjct:  122 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.728e-23
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 248
            KF DENF  KH     LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV G+DVVK +E +GS+SG+ +K ++I DCG+
Sbjct:   80 KFKDENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.257e-23
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 251
            +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGM+VV+ +E   + S  +  K V+IADCG++
Sbjct:  122 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.948e-23
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 251
            +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E   + S  +  K V IADCG +
Sbjct:  113 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 2.948e-23
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTN--KPVVIADCGQL 251
            +F DENF  KH GPG +SMANAG  TNGSQFF+ T KT WLDGKHVVFG+V+EGMDVV+ +E    + GR    K V IADCG++
Sbjct:  122 RFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.948e-23
Identity = 55/85 (64.71%), Postives = 60/85 (70.59%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK--PVVIADCGQL 251
            KF DENF  KHT  GILSMAN G  TNGSQFF+   KT+WLD KHVVFG+VVEGMDVV  I K GS SG+  K   + I DCG L
Sbjct:   85 KFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of CF838123 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.851e-23
Identity = 55/86 (63.95%), Postives = 65/86 (75.58%), Query Frame = 3
Query:    3 KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 251
            +FADENF  +H+ PG+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V+EGMDVV  IE   + +G  +KP   VVIADCG L
Sbjct:  112 RFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIE--NTPTGSRSKPSVDVVIADCGLL 195          
The following BLAST results are available for this feature:
BLAST of CF838123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
CP20C_ARATH5.941e-2477.42Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
CYP5_RHIOR7.759e-2460.24Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIE_DROME1.013e-2359.04Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPIB_RAT1.728e-2360.71Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIA_SCHMA1.728e-2362.20Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIB_HUMAN2.257e-2360.71Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIB_CHICK2.948e-2361.90Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_BOVIN2.948e-2362.35Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
CYPH_ENCCU2.948e-2364.71Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
PPIB1_RHIOR3.851e-2363.95Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838123 ID=CF838123; Name=CF838123; organism=Citrus sinensis; type=EST; length=271bp
CGAAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATC
CTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGT
CTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTC
AGGTCGTCGAAGGGATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCC
AGCTCCGGCAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATT
GTCTTAGATTTGATCATGATA
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