CF838138

Overview
NameCF838138
Unique NameCF838138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.164e-14
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+RQRPWGKWAAEIRDP+K  RVWLGTF+            A R RG+KAKLNF
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  511 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 693
            +R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   85 LRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.202e-13
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  511 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 690
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.498e-13
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  511 KSHPKQP-LKVKNEKAEDSSNKAARTEWKEK-KTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 795
            K+H ++  +   + +  +SS  A + E   K + ++ +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T           A   RG +AKLNF
Sbjct:   95 KNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 42/95 (44.21%), Postives = 51/95 (53.68%), Query Frame = -1
Query:  511 KSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 795
            +S  +Q   VK+E        A  T   EKK        +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT           A ++RG  A  NF
Sbjct:   91 ESKKRQKRAVKSESTVSPVVSATTTTTGEKK--------FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.736e-12
Identity = 50/120 (41.67%), Postives = 61/120 (50.83%), Query Frame = -1
Query:  511 SISDLLGLDYNGKSHPKQP-LKVKNEKAEDSSNKAARTEWKE-----------KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 831
            S+SD      N   +  +P LK +  K     +  A+TEW +           K      K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T           A R+RG KA LNF
Sbjct:   93 SVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = -1
Query:  511 YNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKN----VYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 804
            Y+ +S     L V N +++  S+K+ + E  EKKT+R R +    VYRG+R R WGKW +EIR+P K  R+WLGTF T           A  I+G  A LNF
Sbjct:    6 YSLRSERVTQLLVPNSESDSVSDKS-KAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            +RG+RQRPWGKWAAEIRDP + VRVWLGTF+T           A ++RG  A+LNF
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 47/144 (32.64%), Postives = 67/144 (46.53%), Query Frame = -1
Query:  262 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPS 693
            V++  +RG+R+RPWG++AAEIRDP+K  RVWLGTF++           A+ +RG KAK NF                 P P L   RF  I         P++      +  Q   + +    S   S +ESF G  P   +P+
Sbjct:   23 VKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF----------PIDSSSPPPPNL---RFNQIRNQNQNQVDPFMDHRLFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPA 153          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  511 KTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 705
            KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   18 KTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
The following BLAST results are available for this feature:
BLAST of CF838138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ABR1_ARATH3.164e-1464.29Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF114_ARATH7.048e-1459.02Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH1.202e-1360.00Ethylene-responsive transcription factor ERF113 OS... [more]
EF109_ARATH3.498e-1343.30Ethylene-responsive transcription factor ERF109 OS... [more]
CRF2_ARATH1.018e-1244.21Ethylene-responsive transcription factor CRF2 OS=A... [more]
EF102_ARATH1.736e-1241.67Ethylene-responsive transcription factor 5 OS=Arab... [more]
DREB3_ARATH2.267e-1242.16Dehydration-responsive element-binding protein 3 O... [more]
CRF1_ARATH5.051e-1258.93Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF82_ARATH6.597e-1232.64Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF4_TOBAC6.597e-1253.85Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838138 ID=CF838138; Name=CF838138; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTTTTAGCAACATAAAACACAAATTAAAATAAACAAAGTCATTAAC
AACATAAAACACAAAATCAAAACTACATAAACAGCATTAAACACAATAAC
TCAAAACACAGACCCACACGAACACACAGCACGGCCACAACTCAATTCGT
TTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTCAGCTGCTGAG
TCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTCACACCCACCA
GCAACGTTTCCACTCGGCTGACTCATTAATGGCTCCAATCCCAAAAACGA
TTCCAAGCGCGAAATTTGCTGGCTCAGCTCAAACTCGTCGTCTACTGCCC
TGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCACGGGGACGGC
GCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCTGAGTCAACTC
AGGGGATGGCATGCAGCGTTTCTTAGCCGGGGGTGGAGCTATTGGCGGCG
GCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGATACGCTTGGCG
GCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGAAAGTGCCGAG
CCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCTGCCCATTTTC
CCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCGAACTCGCTGA
GTCTTCTTCTCCTTCCACTCAGTACGAGCAGCTTTATTGCTTGAATCTTC
AGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGGGATTTGCCAT
TGTAGTCCAAGCCCAAGAGGTCGGAAATGGAACCAAACTCGGACCAGAGA
TCCTCGGAGGGTCATTTGCGCTCGCGCCTGACCGG
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