CF838138

Overview
NameCF838138
Unique NameCF838138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T           A ++RG KA LNF
Sbjct:   72 YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNF 128          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = -1
Query:  511 VRKNV-YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 693
            +RK V +RG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   27 MRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T           A R+RG KA LNF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T           A R+RG KA LNF
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = -1
Query:  511 KEKKTQRVRKNV-------YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 714
            K++KT  V   V       YRG+RQRPWGK+AAEIRDP K G RVWLGTF T           A R+RG +A LNF
Sbjct:  129 KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1
Query:  511 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 690
            R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T           A +++G  A  NF
Sbjct:   94 RRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 153          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1
Query:  511 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 693
            V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF++           A+ +RG KAK NF
Sbjct:   22 VKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF 82          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = -1
Query:  511 KTQRVRKNV-----YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 705
            KT  V+ N      YRG+R+RPWG++AAEIRDP+K  RVWLGTF+T           A   RG KAK NF
Sbjct:    6 KTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNF 75          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = -1
Query:  511 KNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 687
            KN+YRG+RQR WGKW AEIR P    R+WLGTF T           A ++RGD AKLNF
Sbjct:   68 KNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNF 126          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = -1
Query:  514 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLN 678
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT           AK++ G +AKLN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
The following BLAST results are available for this feature:
BLAST of CF838138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EF105_ARATH3.274e-1161.40Ethylene-responsive transcription factor ERF105 OS... [more]
ERF80_ARATH4.276e-1154.84Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF2_TOBAC4.276e-1161.40Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY4.276e-1161.40Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF100_ARATH4.276e-1152.63Ethylene-responsive transcription factor 1A OS=Ara... [more]
PTI6_SOLLC5.585e-1150.00Pathogenesis-related genes transcriptional activat... [more]
ERF83_ARATH5.585e-1152.46Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF76_ARATH5.585e-1151.43Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF56_ARATH5.585e-1155.93Ethylene-responsive transcription factor ERF056 OS... [more]
DRE2G_ARATH5.585e-1154.55Dehydration-responsive element-binding protein 2G ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838138 ID=CF838138; Name=CF838138; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTTTTAGCAACATAAAACACAAATTAAAATAAACAAAGTCATTAAC
AACATAAAACACAAAATCAAAACTACATAAACAGCATTAAACACAATAAC
TCAAAACACAGACCCACACGAACACACAGCACGGCCACAACTCAATTCGT
TTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTCAGCTGCTGAG
TCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTCACACCCACCA
GCAACGTTTCCACTCGGCTGACTCATTAATGGCTCCAATCCCAAAAACGA
TTCCAAGCGCGAAATTTGCTGGCTCAGCTCAAACTCGTCGTCTACTGCCC
TGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCACGGGGACGGC
GCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCTGAGTCAACTC
AGGGGATGGCATGCAGCGTTTCTTAGCCGGGGGTGGAGCTATTGGCGGCG
GCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGATACGCTTGGCG
GCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGAAAGTGCCGAG
CCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCTGCCCATTTTC
CCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCGAACTCGCTGA
GTCTTCTTCTCCTTCCACTCAGTACGAGCAGCTTTATTGCTTGAATCTTC
AGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGGGATTTGCCAT
TGTAGTCCAAGCCCAAGAGGTCGGAAATGGAACCAAACTCGGACCAGAGA
TCCTCGGAGGGTCATTTGCGCTCGCGCCTGACCGG
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