CF838138

Overview
NameCF838138
Unique NameCF838138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  511 KQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 783
            ++ L   +++ +  ++   R   K   + +++K  +RG+RQRPWGKWAAEIRDP +  R+WLGTF T           A R+RG  A  NF
Sbjct:   92 RKRLSSSSDETQSPASSRQRPNNKVSVSGQIKK--FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T           A+  RG KAK NF
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 35/79 (44.30%), Postives = 41/79 (51.90%), Query Frame = -1
Query:  511 DSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 747
            DS         K+KK +   K VYRG R R WGKW +EIR+P K  R+WLGTF T           A  I+G  A LNF
Sbjct:    3 DSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNF 81          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = -1
Query:  511 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 678
            +RG+R+RPWG++AAEIRDP+K  RVWLGTF++           A+ +RG KAK NF
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNF 83          
BLAST of CF838138 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = -1
Query:  511 FGSISDLLGLDYNGKSHPKQPLKVK-NEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 837
            +G + D   + +   +   + +K++  E+ E + + +           + +   YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +           A R+RG KA LNF
Sbjct:   53 YGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163          
The following BLAST results are available for this feature:
BLAST of CF838138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CRF3_ARATH5.585e-1138.46Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF79_ARATH7.294e-1157.14Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF78_ARATH9.526e-1157.14Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF42_ARATH9.526e-1144.30Ethylene-responsive transcription factor ERF042 OS... [more]
ERF3_TOBAC9.526e-1153.57Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF1_SOLLC9.526e-1135.14Ethylene-responsive transcription factor 1 OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838138 ID=CF838138; Name=CF838138; organism=Citrus sinensis; type=EST; length=885bp
TTTTTTTTTAGCAACATAAAACACAAATTAAAATAAACAAAGTCATTAAC
AACATAAAACACAAAATCAAAACTACATAAACAGCATTAAACACAATAAC
TCAAAACACAGACCCACACGAACACACAGCACGGCCACAACTCAATTCGT
TTATTATTATTTTTCCTAACACAAGAACTGATTGCTGTTCAGCTGCTGAG
TCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCGAGTCACACCCACCA
GCAACGTTTCCACTCGGCTGACTCATTAATGGCTCCAATCCCAAAAACGA
TTCCAAGCGCGAAATTTGCTGGCTCAGCTCAAACTCGTCGTCTACTGCCC
TGGGTTGATAAAACTCATTCTGATACCCAAACCCCACCCACGGGGACGGC
GCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTCGGCTGAGTCAACTC
AGGGGATGGCATGCAGCGTTTCTTAGCCGGGGGTGGAGCTATTGGCGGCG
GCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGCGGATACGCTTGGCG
GCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTGTTGAAAGTGCCGAG
CCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTCAGCTGCCCATTTTC
CCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCTTGCGAACTCGCTGA
GTCTTCTTCTCCTTCCACTCAGTACGAGCAGCTTTATTGCTTGAATCTTC
AGCCTTCTCATTTTTCACTTTGAGAGGTTGCTTAGGGTGGGATTTGCCAT
TGTAGTCCAAGCCCAAGAGGTCGGAAATGGAACCAAACTCGGACCAGAGA
TCCTCGGAGGGTCATTTGCGCTCGCGCCTGACCGG
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