CF838155

Overview
NameCF838155
Unique NameCF838155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838155_ssr48 microsatellite CF838155_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10886 contig Csv1_Contig10886:5..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 73/224 (32.59%), Postives = 108/224 (48.21%), Query Frame = 2
Query:  179 DESFDGRWIVSQKD-----EYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE 832
            D+S++  W+ S+       ++K       S+  +D GL   E A+ YA+ ++  +P S +   +V+Q+ V+ +  ++CGG YLK     +     K+   E+PY IMFGPD CG  T KVH I  +K         H +K       D  TH+YT I+KPDN   +LID E+ +  +  A  DF P                       KI DP+A KPEDWD+
Sbjct:   29 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP---------------------NKKIKDPEAKKPEDWDD 221          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.883e-24
Identity = 79/241 (32.78%), Postives = 115/241 (47.72%), Query Frame = 2
Query:  137 ISASDDATILYESY--DESFDGRWIVSQ--KDEYKGVWKHSKSEG--HEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDA 838
            ++A+D A    E +   +++  RW+ S+   D  K V    K  G   +D GL   + A+ YA+  +  EP S K  T+V+Q+ V+ +  ++CGG Y+K      +G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA 223          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 71/222 (31.98%), Postives = 105/222 (47.30%), Query Frame = 2
Query:  170 ESYDESFDGRWIVSQKDEYKGVWKHSKSEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE 832
            ES +      +   ++ E+K     S  +  ED GL   + A+ Y I +++ EP S +  T+VLQ+ V+    + CGGAY+K L    +    K+F  ESPY IMFGPD CG AT KVH I  +K         H +K       D  TH+YT I+ P+N+  +L+D  + ++ +     D  PP                       I DPD  KP++WD+
Sbjct:   28 ESIENWVQSTYNAEKQGEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTMVLQFTVKFDKTVSCGGAYIKLL---GSDIDPKKFHGESPYKIMFGPDICGMATKKVHVIFNYKGK------NHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNAKVEEGSLEDDWDMLPP----KKIDDPNDKKPDDWVDEQFIDDPDDKKPDNWDQ 236          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 83/240 (34.58%), Postives = 116/240 (48.33%), Query Frame = 2
Query:  137 ISASDDATILYESYDESFDGRWIVSQ--KDE-YKGVWKHSKSEGH---EDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVS-KEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE 832
            ++A        E +++ ++ RW+ S+  KDE   G W H+  + +   ED G+   E  + YAI  E  E  S KD T+VLQ+ V+ +  L+CGG Y+K L     G V  K    ++ Y I+  PD    +T KVH IL     K G+   H +K      +D+LTHVYT I++PD    ILID EEK   +     D  PP                      KI DP+A KPEDWD+
Sbjct:   20 VAAVAGEVFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPE-FSNKDKTLVLQFSVKHEQKLDCGGGYVKLL----GGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILT----KDGK--NHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPP---------------------KKIKDPEAKKPEDWDD 227          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-23
Identity = 79/241 (32.78%), Postives = 113/241 (46.89%), Query Frame = 2
Query:  137 ISASDDATILYESY--DESFDGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDA 838
            ++A+D A    E +   +++  RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K       G   K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A
Sbjct:   14 LAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA 223          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 77/241 (31.95%), Postives = 110/241 (45.64%), Query Frame = 2
Query:  134 LISASDDATILYESYDESFDGRWIVSQ---KDEYKGVWKHSKS----EGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE 832
            L+ A+       E++D S+  RW  S     D   G +K +      +   D G+  G  +K +AI   L           V+Q+ V+ +  L+CGG Y+K + P  +     EF  ++PY IMFGPD CG +T KVH IL +K         + +K      +D+LTHVYT ++KPDN  ++LID +E    +     D  PP                       I DP A KPEDWDE
Sbjct:   12 LVVAASAKDYFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVV-PATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKN------YLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPP---------------------KTIKDPKASKPEDWDE 224          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.695e-22
Identity = 75/230 (32.61%), Postives = 108/230 (46.96%), Query Frame = 2
Query:  164 LYESYD-ESFDGRWIVSQ---KDEYKGVWKHSK--SEGHEDYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDE 832
            L E++D E+++  WI S+   K+  K V       ++   D G+   + A+ YA  ++ D   S +D  +V+Q+ V+ +  ++CGG Y+K     +      +   ESPY IMFGPD CG  T KVH I  +K         H +        D  TH YT I++PDN   +LID E+ +  N     DF  P                    RA IPDPD  KPEDWD+
Sbjct:   23 LKENFDNENWEDTWIYSKHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDG-FSNEDKPLVVQFSVKHEQNIDCGGGYVKLF---DCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKN------HLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAP----KKIKDPTATKPEDWDDRATIPDPDDKKPEDWDK 238          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.695e-22
Identity = 78/241 (32.37%), Postives = 111/241 (46.06%), Query Frame = 2
Query:  137 ISASDDATILYESYDESFD--GRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDA 838
            ++A++ A    E + +  D   RW+ S+   D  K V    K  G +  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K           K+   +S Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A
Sbjct:   14 LAAAEPAVYFKEQFLDGDDWTNRWVESKHKSDFGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDAAKPEDWDERA 223          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 81/241 (33.61%), Postives = 112/241 (46.47%), Query Frame = 2
Query:  137 ISASDDATILYESY--DESFDGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDA 838
            ++A++ A    E +   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA 223          
BLAST of CF838155 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 81/241 (33.61%), Postives = 112/241 (46.47%), Query Frame = 2
Query:  137 ISASDDATILYESY--DESFDGRWIVSQ--KDEYKGVWKHSKSEGHE--DYGLLVGEPAKKYAIVKELDEPLSLKDGTVVLQYEVRLQNGLECGGAYLKYLRPQEAGWVSKEFDNESPYMIMFGPDKCG-ATNKVHFILKHKNPKSGEYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDA 838
            ++A++ A    E +   + +  RWI S+   D  K V    K  G E  D GL   + A+ YA+     EP S K  T+V+Q+ V+ +  ++CGG Y+K L P          D+E  Y IMFGPD CG  T KVH I  +K       I   ++       D+ TH+YT I++PDN   + ID  + +  +     DF PP                      KI DPDA KPEDWDE A
Sbjct:   14 LAAAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVK-LFPNSLDQTDMHGDSE--YNIMFGPDICGPGTKKVHVIFNYKG--KNVLINKDIR----CKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP---------------------KKIKDPDASKPEDWDERA 223          
The following BLAST results are available for this feature:
BLAST of CF838155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_BOMMO1.062e-2432.59Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]
CALR_MOUSE6.883e-2432.78Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_SCHMA8.990e-2431.98Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_MAIZE8.990e-2434.58Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_RAT1.174e-2332.78Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_CHLRE1.533e-2331.95Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_DROME1.695e-2232.61Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALR_CRIGR1.695e-2232.37Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_MACFU2.214e-2233.61Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA2.214e-2233.61Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05N09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838155 ID=CF838155; Name=CF838155; organism=Citrus sinensis; type=EST; length=841bp
CTTGGGTTGATTCATTTTAAGATTTAGATTCAGATCGCGGTCTCGGACTC
TCTCTCTCTCACACATGGTGCAGAGAATGGCTGTCTCTCTGCGGTTCGCT
CTCCTGCTTTTCGCTGCTTTCGTTTCATTTCAATTGATCTCCGCTTCTGA
TGATGCCACGATCTTGTACGAGTCGTATGACGAGTCGTTCGACGGACGAT
GGATCGTTTCTCAGAAAGATGAATACAAAGGTGTATGGAAGCATTCAAAG
AGTGAGGGTCATGAAGATTATGGCCTTCTTGTTGGTGAGCCGGCAAAGAA
GTACGCGATAGTGAAGGAGCTTGATGAGCCCCTGAGTTTGAAGGATGGAA
CTGTTGTCCTCCAGTATGAGGTTCGCCTCCAGAATGGTCTTGAATGTGGT
GGTGCATATCTGAAATACCTGCGGCCTCAGGAGGCAGGTTGGGTATCCAA
GGAGTTCGACAATGAATCTCCGTATATGATTATGTTTGGACCTGATAAAT
GTGGTGCAACAAACAAGGTGCACTTCATCTTAAAGCATAAGAATCCCAAG
AGTGGAGAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTC
TGATAAACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGT
TGAGAATTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCT
GCTGATGATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCC
AGATGACAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACC
CTGATGCAGTAAAACCTGAAGACTGGGATGAGGATGCTCCC
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