CF838218

Overview
NameCF838218
Unique NameCF838218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  373 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 597
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_ECO57 (NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = -3
Query:  373 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 597
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.026e-24
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = -3
Query:  373 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 603
            + G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKK 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_CANGA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida glabrata GN=ISU1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = -3
Query:  370 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 606
            +K+G I D  FKTFGCGSAIASSS  TE V G  +++   IKNT IAK LSLPPVKLHCSMLAEDAIKAA+KDY++KRT
Sbjct:  129 DKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRT 207          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: NIFU_HAEIN (NifU-like protein OS=Haemophilus influenzae GN=nifU PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            + +G I DA FKT+GCGSAIASSS+ TEWVKGK +EE  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK+
Sbjct:   48 DDNGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQ 125          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_YEAST (Iron sulfur cluster assembly protein 1, mitochondrial OS=Saccharomyces cerevisiae GN=ISU1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            + +G I D  FKTFGCGSAIASSS  TE V+G  +++   IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY++KR
Sbjct:   81 DSTGVIEDVKFKTFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKR 158          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_TRAHO (Iron sulfur cluster assembly protein 1 OS=Trachipleistophora hominis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = -3
Query:  376 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 591
            I DA F+TFGCGSAIASSS+ATEW+KGK + + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   64 IKDAKFRTFGCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKK 135          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_ASHGO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya gossypii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            + +G I +  FKTFGCGSAIASSS  TE V+GK + +   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY +KR
Sbjct:   71 DSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYRSKR 148          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_YARLI (Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica GN=ISU1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = -3
Query:  373 EKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 606
            + +G I D  FKTFGCGSAIASSS  TE V+GK + E   IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +KR
Sbjct:   82 DDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKR 159          
BLAST of CF838218 vs. ExPASy Swiss-Prot
Match: ISU1_ENCCU (Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi GN=ISU1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = -3
Query:  385 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 603
            K   I DA FKTFGCGSAIASSS+ATEW+K K ++E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+
Sbjct:   60 KDNVIEDAKFKTFGCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF 132          
The following BLAST results are available for this feature:
BLAST of CF838218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIFU_ECOL67.859e-2570.67NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]
NIFU_ECO577.859e-2570.67NifU-like protein OS=Escherichia coli O157:H7 GN=n... [more]
NIFU_BUCAP1.026e-2466.23NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
ISU1_CANGA1.341e-2470.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_HAEIN2.287e-2467.95NifU-like protein OS=Haemophilus influenzae GN=nif... [more]
ISU1_YEAST2.287e-2470.51Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_TRAHO5.094e-2473.61Iron sulfur cluster assembly protein 1 OS=Trachipl... [more]
ISU1_ASHGO1.482e-2369.23Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_YARLI4.312e-2369.23Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_ENCCU4.312e-2371.23Iron sulfur cluster assembly protein 1 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838218 ID=CF838218; Name=CF838218; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTTTTTTTTTTTAGTAGTAGAAACATCATTATTTTCCTCCGTCCC
CACACCATCGTGCGCAGAGAATCAACAAAATTTGAACAACATAATTAAAA
CAAACTTAGAACCATGCAGAGGATCACACTCTCAGTGGTTCAGTTACACA
CGCACAATTCAGATTCATAATGTACAAAATGGCAGTTCTAATTAATAACC
ATTAACCCTTGCACCACCTGCCATGTACCATCAATATTAGGATTTGCAGT
GTCCCTGATACACCTTCCACAAGTAGCACATTAACATCATTTTTCAAATG
TTTTCATCAACATCTTCAAGCATCGGCAGCCTTCTCTGCAGGAGCTGCCT
CTGAGGCGGCACTTGATTTGGTACGTTTAGCTTCGTAATCTTTTACAGCA
GCCTTGATAGCATCTTCAGCAAGCATGCTACAATGCAGCTTAACCGGTGG
TAGAGAAAGATGTTTTGCAATTTCCGTGTTCTTAATGGACAAAACTTCCT
CCATCTGCTTCCCTTTCACCCATTCTGTGGCAACAGATGATGAGGCGATG
GCAGAGCCACAACCGAAGGTCTTGAAGCAGGCGTCGACGATCTGACCACT
CTTTTCAT
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