CF838227

Overview
NameCF838227
Unique NameCF838227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.060e-54
Identity = 98/201 (48.76%), Postives = 133/201 (66.17%), Query Frame = -2
Query:  146 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTECV 745
            + S G   +E DFEFLGN +G+PY + TNV+  G G+REQ+  LWFDPT +FHTYS+LWN ++++F VD TPIR   N+E +G  FPK+Q M +YSS+WNA++WAT+GG VKTDWS APF ASY+GF  +AC     + G  +    S       W  +    EL+     Q+ WV+ N++IY+YCTD  RFP  +P EC+
Sbjct:   91 LKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEAC---VVINGQSSCPNVSGQGSTGSWLSQ----ELDSTGQEQMRWVQNNYMIYNYCTDAKRFPQGLPRECL 284          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.972e-54
Identity = 97/200 (48.50%), Postives = 130/200 (65.00%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAI-PTEC 745
            +SS G  H+E DFEFLGN TG+PY + TN+Y  G GNREQ+   WF+PT  FH Y++ WN  +VV+ VD TPIRV  N E +GI +P  Q M V++S+WNA+DWATQGGRVKT+W+ APFVA  + ++  AC    SV    + K+C     +  WW  P+ S+L   Q  ++  +R   +IYDYC DT+RF  + P EC
Sbjct:   92 LSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWKGSV----SIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPEC 287          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.530e-53
Identity = 99/202 (49.01%), Postives = 129/202 (63.86%), Query Frame = -2
Query:  143 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTECVH 745
            + S G   +E DFEFLGN TG+PY + TNVY  G G+REQ+  LWFDPT +FHTYS+LWN   +VF+VD+ P+R   NL+H GI +PK Q M +YSS+WNAD WAT+GG VKTDWS APF ASY+ F  DAC          +  + S  A    W+ +     L++    ++  V+  ++IY+YCTDT RFP   P EC H
Sbjct:   95 LKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADAC--------VSSGGRSSCPAGSPRWFSQ----RLDLTAEDKMRVVQRKYMIYNYCTDTKRFPQGFPKECRH 284          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.191e-51
Identity = 97/200 (48.50%), Postives = 127/200 (63.50%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            +SS G   +E DFEFLGN TG PY + TNV+  G G+RE +  LWFDPT +FHTY++ WN   ++FLVD  PIRV  N E  G+ +PK+Q M +YSS+W ADDWAT+GGRVK DWS+APF ASY+ F  D   C  S   +     C  ++    W      + LN  Q  ++MWV+ + +IY+YCTD  RFP  +P EC
Sbjct:   95 LSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFN-DQSSC--SRTSSSKWVTCEPNSNSWMW------TTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKEC 285          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.701e-50
Identity = 89/199 (44.72%), Postives = 129/199 (64.82%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 745
            ++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P  + M + +S+WN ++WAT GG+ K +W++APF A Y+GF    C        ++NA  C S+   R+WW+  T S+L+ ++   +  VRA ++ YDYC+D  R+P  P+EC
Sbjct:   97 LTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQ---SNNANVCGST---RYWWNTRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVPPSEC 288          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.608e-50
Identity = 93/200 (46.50%), Postives = 127/200 (63.50%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            + S+G   +E DFEFLGN +G+PY + TNVY  G G++EQ+  LWFDPT  FHTYS+LWN ++++  VD+TPIR   N E  G+ FPK++ M +Y+S+WNADDWAT+GG VKTDWS APF+ASY+  +ID                   S     W+ +    E++     +L WV+ N++IY+YCTD  RFP   P EC
Sbjct:   89 LKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIKID-------------------SKPNSNWYTQ----EMDSTSQARLKWVQKNYMIYNYCTDHRRFPQGAPKEC 265          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.936e-48
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 745
            ++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P  + M V +S+WN DDWAT GGR K +WS++PF+A ++ F +  C        ++N   C SS    +WW+      L+ ++      VR+ ++ YDYCTD S++   P EC
Sbjct:  100 LTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGR---SNNVGACESS---NYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKYQTPPREC 289          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.632e-48
Identity = 86/200 (43.00%), Postives = 125/200 (62.50%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            + S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT +FHTY ++WN ++V+F +D  PIR   N E  G+PFPK Q M +Y+S+W A+ WAT+GG  KTDWS APF A Y+ + +DAC        ++    CS+++    W+ +     L+    +++ W +  +++Y+YCTD  RFP   P EC
Sbjct:   95 LKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDAC------VWSNGKSSCSANSS---WFTQ----VLDFKGKNRVKWAQRKYMVYNYCTDKKRFPQGAPPEC 281          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.651e-47
Identity = 91/207 (43.96%), Postives = 122/207 (58.94%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKC-------SSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            + S G   +E DFEFLGN +G+PY+V TNVY  G G+REQ+  LWFDPT  FH YS+LWN   +VF +D  PIR   NLE  G+ +PK+Q M +Y S+WNADDWAT+GG VKT+WS  PFVAS+  +  +     + V G      C       SSS+    W+ +     ++      L WV+   ++Y+YC D  RF   +P EC
Sbjct:   93 LKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDSTSSSSSSTSEWFSQ---RGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVEC 296          
BLAST of CF838227 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.036e-46
Identity = 86/200 (43.00%), Postives = 124/200 (62.00%), Query Frame = -2
Query:  149 MSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 745
            + S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WAT+GG  KTDWS APF A Y+ + +D C        A+    CS+++    W+ +    +L+ +   ++  V++ ++IY+YCTD  RFP  +P EC
Sbjct:   95 LKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGC------VWANGKSSCSANSP---WFTQ----KLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAEC 281          
The following BLAST results are available for this feature:
BLAST of CF838227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH23_ARATH1.060e-5448.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH8.972e-5448.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH1.530e-5349.01Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH3.191e-5148.50Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH2.701e-5044.72Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH4.608e-5046.50Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH1.936e-4844.22Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH20_ARATH5.632e-4843.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH21_ARATH3.651e-4743.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH4.036e-4643.00Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838227 ID=CF838227; Name=CF838227; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTTACTGTTATGATCGATCTTTTTCCACCCCTCCCTT
TTTTTTGACCTTTTTTTTTCAACTTTTTTACATAAGAAACGCAAATCCTT
TTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGCACGC
ACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTCATAG
ATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCACATT
GAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCACTGC
TGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCACTCA
CATGCATCAATTTCAAAGCCCTTGTATGATGCAACAAAAGGTGCATGGCT
CCAGTCCGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCATTCC
ATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAATTCCT
TTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCAAAAA
TACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGTATGAAATTCCTTTG
TTGGGTCGAACCAGAGGTCAAGTCTCTGCTCTCTGTTGCCCACACCATTC
ACATAAACATTGGTTTGGACTAAGTATGGCTCTCCTGTAGTGTTCCCCAG
GAACTCAAAATCGAACTCGTTGTGATTTGGACCGTCTGATGACATA
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