CF838228

Overview
NameCF838228
Unique NameCF838228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.929e-53
Identity = 105/244 (43.03%), Postives = 146/244 (59.84%), Query Frame = 2
Query:  104 IFSLFVGLLMV-----------GLVSSAKFDDLYQTSWAFNHVQ--YDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSS 796
            IFS+FV  L +           G+     F   Y  +W  +HV   + G+ + L +D  SG GF SK  Y  G   ++IK+  G++ G VTAFY++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P  + M V +S+WN DDWAT GGR K +WS++PF+A ++ F +  C        ++N   C SS
Sbjct:    6 IFSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGR---SNNVGACESS 243          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.480e-52
Identity = 102/236 (43.22%), Postives = 145/236 (61.44%), Query Frame = 2
Query:   95 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSS 796
            +S++F +F          +  FD  Y  +W  +H+     G  ++L++D  SG+GF SKS Y  G   ++IKL   DSAG VTAFY++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P  + M + +S+WN ++WAT GG+ K +W++APF A Y+GF    C        ++NA  C S+
Sbjct:   11 VSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQ---SNNANVCGST 242          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.239e-52
Identity = 98/222 (44.14%), Postives = 149/222 (67.12%), Query Frame = 2
Query:   95 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDAC 742
            +S+  ++ V  L     ++A F + +    A +HV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ + M +++++W+   WAT+ G VK DWS APFV SY+G+  +AC
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNAC 226          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.777e-50
Identity = 105/222 (47.30%), Postives = 142/222 (63.96%), Query Frame = 2
Query:  146 SSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKK--CSSSA 799
            S   FDD Y  +W  N+V     G  ++L+LD+ SG+GF SK+ Y  G   I+IK+   D++G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P  + M V  S+WN ++WAT GG+ K +WS APF A+++GF    C          NA+K  C SSA
Sbjct:   35 SKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGC--------FTNAEKNACGSSA 246          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 93/213 (43.66%), Postives = 133/213 (62.44%), Query Frame = 2
Query:  143 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPAS 757
            V ++ FD  ++T W   H + + D + L LD  +G+GF S   Y  G     IKL  G +AG  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP  + M VY SIW+A DWAT+ GR+K D+ + PFVA YK F++  C   +S
Sbjct:   34 VPTSPFDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FPT-RPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTADSS 243          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.969e-41
Identity = 92/225 (40.89%), Postives = 132/225 (58.67%), Query Frame = 2
Query:  113 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDAC 742
            +F+ +L + L SS+ F +L   S+  +     GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P  + M +Y++IW+A DWAT GG+ K ++  APFVA +K F +D C
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGC 232          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.483e-41
Identity = 85/195 (43.59%), Postives = 119/195 (61.03%), Query Frame = 2
Query:  206 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADN 775
            D  +++L LD Y+G+GF S S Y  G  S  IKL G  +AG V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+ + M +Y++IW+A  WAT GG+   D++ +PFV+ +K   +D C    S  G +N
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENN 251          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.844e-40
Identity = 84/213 (39.44%), Postives = 122/213 (57.28%), Query Frame = 2
Query:  143 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPAS 757
            V S  F   ++  W   H + D + L + LD  SG+GF S   +  G     IKL  G +AG +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR +        P    + M +Y SIW+A  WAT+ G+ K D+ + PF A Y  F+   C   +S
Sbjct:   38 VGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSS 247          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.843e-39
Identity = 91/226 (40.27%), Postives = 129/226 (57.08%), Query Frame = 2
Query:   86 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDAC 742
            +V MSL  SL  G  +  L    +FD+ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    SAG V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +YS+IW+   WAT GG+   ++ +AP+V+ +    +  C
Sbjct:    8 LVFMSLFTSLVSGFALQKL-PLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGC 231          
BLAST of CF838228 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.843e-39
Identity = 88/226 (38.94%), Postives = 128/226 (56.64%), Query Frame = 2
Query:   86 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDAC 742
            +V MSL   L  G  +  L  ++ F++ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +Y++IW+   WAT GG+   ++ +AP++A +    +  C
Sbjct:    8 LVFMSLFSGLVSGFALQNLPITS-FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGC 231          
The following BLAST results are available for this feature:
BLAST of CF838228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH3_ARATH2.929e-5343.03Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH2_ARATH2.480e-5243.22Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ORYSJ3.239e-5244.14Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH1_ARATH1.777e-5047.30Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.116e-4443.66Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH1.969e-4140.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH7.483e-4143.59Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH2.844e-4039.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH1.843e-3940.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.843e-3938.94Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_05P11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa05P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838228 ID=CF838228; Name=CF838228; organism=Citrus sinensis; type=EST; length=799bp
GAAGCTTCAACTTCCCTCCACTTCACTGGGCCTGCTCTGCTCATTCGCTT
ACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGTTAAAATGTCT
TTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTAGGTTTGGTCAGCTC
AGCTAAGTTTGATGACCTTTATCAAACAAGCTGGGCATTTAATCATGTTC
AGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGCT
GGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAAT
TAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATGT
CATCAGACGGTCCAAATCACAACGAGTTCGATTTTGAGTTCCTGGGGAAC
ACTACAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTGT
GGGCAACAGAGAGCAGAGACTTGACCTCTGGTTCGACCCAACAAAGGAAT
TTCATACCTATTCCCTCCTTTGGAACCAGCGCCAAGTTGTATTTTTGGTG
GATGAGACCCCAATTAGAGTGCACACTAACTTGGAGCACAAAGGAATTCC
CTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAATGCTG
ATGACTGGGCCACACAGGGGGGAAGGGTCAAGACGGACTGGAGCCATGCA
CCTTTTGTTGCATCATACAAGGGCTTTGAAATTGATGCATGTGAGTGCCC
AGCGTCGGTTGCAGGTGCCGATAATGCCAAAAAATGCAGCAGCAGTGCT
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