CF838311

Overview
NameCF838311
Unique NameCF838311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.833e-50
Identity = 96/126 (76.19%), Postives = 110/126 (87.30%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG VA +S +DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  319 DVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.115e-49
Identity = 91/130 (70.00%), Postives = 114/130 (87.69%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +++RG+VA +S +DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK+V+ K+ +G
Sbjct:  319 EIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.115e-49
Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG+VASN+ +DPA+EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  307 DIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.115e-49
Identity = 94/126 (74.60%), Postives = 110/126 (87.30%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG VA +S +DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  319 DIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.484e-49
Identity = 92/127 (72.44%), Postives = 110/127 (86.61%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 399
            D++RG V S+S  DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  319 DIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.245e-49
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG VA +S +DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  319 DVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.245e-49
Identity = 93/126 (73.81%), Postives = 110/126 (87.30%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG VA +S +DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  319 DIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            DL+RG+VAS+S +DPA++  NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P KPM VE F+ YPPLGRFAVRDM+QTVAVGVIK V KK+  G
Sbjct:  307 DLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEVVKKEQKG 436          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 89/130 (68.46%), Postives = 111/130 (85.38%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +++RG VA +S +DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK + TG
Sbjct:  318 EVRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 90/130 (69.23%), Postives = 112/130 (86.15%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG V S+S +DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  319 DIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
The following BLAST results are available for this feature:
BLAST of CF838311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A0_XENLA3.833e-5076.19Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_ORYLA1.115e-4970.00Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_EUGGR1.115e-4973.08Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A3_XENLA1.115e-4974.60Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_CAEEL2.484e-4972.44Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_CHICK3.245e-4975.40Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A2_XENLA3.245e-4973.81Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_STYLE4.238e-4967.69Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_COCIM4.238e-4968.46Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A2_OSCTI4.238e-4969.23Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838311 ID=CF838311; Name=CF838311; organism=Citrus sinensis; type=EST; length=673bp
GAAGAACGTTGCCGTTAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTC
GAACGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCA
TCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGAC
TGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGAT
TGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGA
ATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTT
GAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACAT
GCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATC
CCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATT
TTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTAT
TTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATT
TGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTA
ACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAG
CACTANATTGAGTTGTGAAGTTT
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