CF838311

Overview
NameCF838311
Unique NameCF838311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.228e-49
Identity = 91/130 (70.00%), Postives = 110/130 (84.62%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG V S+S +DPA+E+ NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG+V++IPTKP  VE+F+DY PLGRFAVRDMRQTVAVGVIKSV K D +G
Sbjct:  320 DIRRGSVCSDSKNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.228e-49
Identity = 90/130 (69.23%), Postives = 112/130 (86.15%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG V S+S +DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  319 DIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 90/130 (69.23%), Postives = 111/130 (85.38%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG VAS+S +DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  319 DIRRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 92/130 (70.77%), Postives = 113/130 (86.92%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG V S+S +DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  317 DIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.233e-48
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            DLKRG+V  +S +DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  311 DLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            DLKRG+V  +S +DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  311 DLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 89/125 (71.20%), Postives = 110/125 (88.00%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 393
            D++RG VA +S +DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  318 DIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG VA +S +DP +   +F +QVI++NHPGQIG GYAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSVEK D  G
Sbjct:  318 DIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 89/130 (68.46%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +++RG VA +S +DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSELV KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  316 EIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQG 445          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG VA +S +DP  EAA FT+QVII+NHPGQI  GYAPVLDCH +HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  319 DVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
The following BLAST results are available for this feature:
BLAST of CF838311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A3_OSCTI7.228e-4970.00Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI7.228e-4969.23Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_ONCVO9.441e-4969.23Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A3_RHIRA9.441e-4970.77Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1AC_PORPU1.233e-4870.00Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_PORYE1.610e-4870.00Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_NEUCR1.610e-4871.20Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_YARLI2.103e-4867.69Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_AURPU2.103e-4868.46Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A3_HUMAN2.103e-4873.81Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838311 ID=CF838311; Name=CF838311; organism=Citrus sinensis; type=EST; length=673bp
GAAGAACGTTGCCGTTAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTC
GAACGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCA
TCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGAC
TGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGAT
TGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGA
ATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTT
GAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACAT
GCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATC
CCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATT
TTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTAT
TTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATT
TGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTA
ACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAG
CACTANATTGAGTTGTGAAGTTT
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