CF838311

Overview
NameCF838311
Unique NameCF838311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.044e-47
Identity = 87/125 (69.60%), Postives = 110/125 (88.00%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 393
            +++RG VA +S +DP     +F +QVI++NHPGQ+GNGYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E +PKF+K+GDA +VKMIP+KPM VE+F+D+PPLGRFAVRDMRQTVAVGVIKSVEK
Sbjct:  318 EVRRGNVAGDSKNDPPAGCDSFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.363e-47
Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 393
            +++RG VA +S +DP   AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  318 EIRRGNVAGDSKNDPPMGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.363e-47
Identity = 91/126 (72.22%), Postives = 107/126 (84.92%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG V  +S  DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  319 DIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.363e-47
Identity = 91/126 (72.22%), Postives = 107/126 (84.92%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 396
            D++RG V  +S  DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  319 DIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 89/127 (70.08%), Postives = 107/127 (84.25%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 399
            D++RG V  ++  DP +EAA+F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  L  KIDRR+GK LE+ PKF+K+GDA +VKM+P+K M VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  316 DIRRGNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.037e-47
Identity = 87/125 (69.60%), Postives = 109/125 (87.20%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 393
            +++RG VA +S +DP   AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  318 EIRRGNVAGDSKNDPPLGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.037e-47
Identity = 88/127 (69.29%), Postives = 108/127 (85.04%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 399
            +++RG VA +S +DP +   +FT+QVII NHPGQI  GY+PVLDCHT+HIA +F EL+ KIDRRSGK++E  PKF+K GDA +V+MIP+KPM VETF++YPPLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  317 EIRRGNVAGDSKNDPPKGCDSFTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 86/130 (66.15%), Postives = 108/130 (83.08%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +++RG V  +S +DP +   +FT+QVI++NHPGQI  GY+PVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK D  G
Sbjct:  317 EIRRGNVCGDSKNDPPKGCDSFTAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.180e-47
Identity = 86/130 (66.15%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D++RG V  +S +DP  EAA+F +QVI++NHPGQIG GY PVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VK++  KP+ VET++DYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  317 DIRRGNVCGDSKNDPPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 87/128 (67.97%), Postives = 108/128 (84.38%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 402
            D++RG V  +S +DP    A+FT+QVII+NHPGQI  GY+PVLDCHT+HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK+VEK  P
Sbjct:  317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
The following BLAST results are available for this feature:
BLAST of CF838311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_ASPOR1.044e-4769.60Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_PODAN1.363e-4769.60Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A2_RAT1.363e-4772.22Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE1.363e-4772.22Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A_PUCGR1.780e-4770.08Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_PODCU3.037e-4769.60Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_ARXAD3.037e-4769.29Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_PICGU3.966e-4766.15Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_CRYNE5.180e-4766.15Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A2_SCHPO1.154e-4667.97Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838311 ID=CF838311; Name=CF838311; organism=Citrus sinensis; type=EST; length=673bp
GAAGAACGTTGCCGTTAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTC
GAACGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCA
TCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGAC
TGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGAT
TGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGA
ATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTT
GAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACAT
GCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATC
CCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATT
TTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTAT
TTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATT
TGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTA
ACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAG
CACTANATTGAGTTGTGAAGTTT
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