CF838311

Overview
NameCF838311
Unique NameCF838311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 87/128 (67.97%), Postives = 108/128 (84.38%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 402
            D++RG V  +S +DP    A+FT+QVII+NHPGQI  GY+PVLDCHT+HIA KF+EL+ KIDRRSGK++E+ PKF+K+GDA + KM+P+KPM VE F+DY PLGRFAVRDMRQTVAVGVIK+VEK  P
Sbjct:  317 DIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 88/127 (69.29%), Postives = 105/127 (82.68%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 399
            D++RG VAS++ +DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  308 DIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            D+KRG VAS+S +DPA+ AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  204 DVKRGHVASDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.571e-46
Identity = 83/130 (63.85%), Postives = 109/130 (83.85%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +L+RG+VA +S  +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD +G
Sbjct:  319 ELRRGYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 87/125 (69.60%), Postives = 107/125 (85.60%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 393
            D++RG VAS+S +DPA EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  321 DIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 83/129 (64.34%), Postives = 108/129 (83.72%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 405
            D+KRGFVAS++ +DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIKSV KK+ T
Sbjct:  303 DIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 86/130 (66.15%), Postives = 104/130 (80.00%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +++RG V  +S +DP + A +F + VI++NHPGQI  GY+PVLDCHT+HIA KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  317 EIRRGNVCGDSKNDPPKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.176e-45
Identity = 83/129 (64.34%), Postives = 108/129 (83.72%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 405
            +L+RG+VA +S ++P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  K+ T
Sbjct:  319 ELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETT 447          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.712e-45
Identity = 85/130 (65.38%), Postives = 105/130 (80.77%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +L+RG+VA +S + P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  319 ELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.332e-45
Identity = 84/130 (64.62%), Postives = 106/130 (81.54%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 408
            +L+RG+VA +S  +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIKSV  KD TG
Sbjct:  268 ELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
The following BLAST results are available for this feature:
BLAST of CF838311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A1_SCHPO1.154e-4667.97Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_TETPY1.507e-4669.29Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_EIMBO1.968e-4666.15Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A1_DROME2.571e-4663.85Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_HYDAT7.480e-4669.60Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_CRYPV7.480e-4664.34Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_ASHGO9.769e-4666.15Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A2_DROME2.176e-4564.34Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_APIME3.712e-4565.38Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_RHYAM6.332e-4564.62Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838311 ID=CF838311; Name=CF838311; organism=Citrus sinensis; type=EST; length=673bp
GAAGAACGTTGCCGTTAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTC
GAACGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCA
TCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGAC
TGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGAT
TGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGA
ATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTT
GAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACAT
GCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATC
CCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATT
TTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTAT
TTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATT
TGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTA
ACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAG
CACTANATTGAGTTGTGAAGTTT
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