CF838311

Overview
NameCF838311
Unique NameCF838311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 65/109 (59.63%), Postives = 91/109 (83.49%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 345
            +L+RG+VA +S ++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  305 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.150e-36
Identity = 69/129 (53.49%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 405
            ++K G V  ++ +DP + A +F +QVI+MNHPG I  GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K  T
Sbjct:  304 EIKAGHVCGDAKNDPPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHKKET 432          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.563e-35
Identity = 69/122 (56.56%), Postives = 95/122 (77.87%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKS 384
            D+ RG V  ++ +DP  +  +  +QVI+MNHP  I  GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IKS
Sbjct:  309 DIHRGNVCGDAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 61/124 (49.19%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 390
            D+KRG V  + N+ P   A  FT+++I++ HP  + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I  V+
Sbjct:  306 DIKRGDVVGHPNNPPT-VADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CF838311 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.815e-30
Identity = 60/129 (46.51%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   19 DLKRGFVASNSNDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 399
            D+KRG VA ++N+ P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  300 DIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
The following BLAST results are available for this feature:
BLAST of CF838311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_HELGL1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE1.414e-3659.63Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A2_EUPCR3.150e-3653.49Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_BLAHO1.563e-3556.56Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_SULSO5.754e-3049.19Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_THEON9.815e-3046.51Elongation factor 1-alpha OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838311 ID=CF838311; Name=CF838311; organism=Citrus sinensis; type=EST; length=673bp
GAAGAACGTTGCCGTTAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTC
GAACGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCA
TCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGAC
TGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGAT
TGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGA
ATGGAGACGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTT
GAAACCTTCTCCGATTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACAT
GCGTCAGACTGTTGCTGTGGGTGTTATCAAGAGTGTTGAGAAGAAGGATC
CCACAGGTGCGAAGGTCACCAAGTCCGCAGCCAAGAAGAAATGAGAAATT
TTTATGGGTCTGTCTACAATAGTTAGGGTTTATTTTCTGTCTTTTTTTAT
TTTCTTGTCTGTTTTTGTTTTGCATCAATGTTTCTGCAAACAGCCCTATT
TGCTTCCACCAGTTTGCTGTTGAGCAATTGGGATGTTATCTTTCTGCTTA
ACTGGCTGTGGTGGGTGTTCGGATTTTTATATTCTGAATTTGGTTAATAG
CACTANATTGAGTTGTGAAGTTT
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