CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.367e-24 Identity = 77/226 (34.07%), Postives = 102/226 (45.13%), Query Frame = 3 Query: 336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKW-------------------------------------------FAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSRE------YFADP-----TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 DRPLW+PG+ P WLDG L GDYGFDP GLG E L++ F + ELIHGRWAMLA G L EWL + +W DAG E Y P +TL +++ ++G++E +R A++ D + L YPGG +FDP+ PE L+ EIK+ RLAM+AF+G Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL-----------YPGGKFFDPLGLA-ADPEKTAQLQLAEIKHARLAMVAFLG 255
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.726e-22 Identity = 68/176 (38.64%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 WFPG P+ LDG PGD+GFDPLGL + PE + F ++E+ H RWAML V G+L+PE L ++ W G Y +P T+ ++ + + E +R ++ D P K K YPGG FDP+ + + P L+ EIKNGRLAMLAFVG Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR----------TMEKD-PEKKK------YPGGA-FDPLGFSK-DPAKFEELKLKEIKNGRLAMLAFVG 204
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22 Identity = 67/176 (38.07%), Postives = 90/176 (51.14%), Query Frame = 3 Query: 348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 W PG PS+LDG PGD+GFD LGLG P L+ + ++ELIH RWAMLAV GI++PE L ++ W G Y P T+ ++ + +VE +R ++ D K YPGG FDP+ + + P L+ EIKNGRLA+LA VG Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR----------SMEKDSEKKK-------YPGGA-FDPLGYSK-DPAKFEELKVKEIKNGRLALLAIVG 205
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.119e-21 Identity = 74/226 (32.74%), Postives = 100/226 (44.25%), Query Frame = 3 Query: 336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKW-------------------------------------------FAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSRE------YFADP-----TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 DRPLWFPG+ P +LDG L GDYGFDP GLG E L++ F + ELIHGRWAMLA G + EWL + +W DAG E Y P +TL +++ ++G++E +R A++ D + L YPGG +FDP+ P L+ EIK+ RLAM+ F+G Sbjct: 51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL-----------YPGGKFFDPLGLA-SDPVKKAQLQLAEIKHARLAMVGFLG 252
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20 Identity = 80/214 (37.38%), Postives = 101/214 (47.20%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VGR + A+K VSS PDR + F G PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ SW+ AGS+ +Y + + ++ Q+ LMG VEG R A L T P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 10 VGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLALA-DDPEAFAELKVKEIKNGRLAMFSMFG 206
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20 Identity = 79/214 (36.92%), Postives = 100/214 (46.73%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VGR + TK VSS PDR + F G PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A L T P YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 28 VGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 224
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19 Identity = 76/205 (37.07%), Postives = 97/205 (47.32%), Query Frame = 3 Query: 294 ATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 A+K VSS PDR + F G PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A L T P YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 29 ASKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 216
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.787e-19 Identity = 71/191 (37.17%), Postives = 91/191 (47.64%), Query Frame = 3 Query: 336 DRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 DRPL+ F GS PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A D YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--------------GPLGEVEDPIYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 226
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19 Identity = 76/228 (33.33%), Postives = 102/228 (44.74%), Query Frame = 3 Query: 225 IPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWF-PGST-PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 I + T K+ G A S+ E PDR W P ST P++L G PGDYG+D GL +DPE K + + E+IH RWA+L GIL PE L + ++ W+ AG++ +Y P + VQ+ LMG +EG R +N G D YPG FDP+ P+ L+ EIKNGRLAM + G Sbjct: 6 ISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGG----------PAGEGLDPLYPGES-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSCFG 217
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 6.789e-19 Identity = 66/183 (36.07%), Postives = 88/183 (48.09%), Query Frame = 3 Query: 366 PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ VQ+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |