CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.367e-24
Identity = 77/226 (34.07%), Postives = 102/226 (45.13%), Query Frame = 3
Query:  336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKW-------------------------------------------FAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSRE------YFADP-----TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRPLW+PG+  P WLDG L GDYGFDP GLG   E L++                                           F + ELIHGRWAMLA  G L  EWL  +      +W DAG  E      Y   P     +TL  +++ ++G++E +R A++      D +  L           YPGG +FDP+      PE    L+  EIK+ RLAM+AF+G
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL-----------YPGGKFFDPLGLA-ADPEKTAQLQLAEIKHARLAMVAFLG 255          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.726e-22
Identity = 68/176 (38.64%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            WFPG   P+ LDG  PGD+GFDPLGL + PE  + F ++E+ H RWAML V G+L+PE L     ++   W     G   Y  +P       T+  ++   + + E +R           ++ D P K K      YPGG  FDP+ + +  P     L+  EIKNGRLAMLAFVG
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR----------TMEKD-PEKKK------YPGGA-FDPLGFSK-DPAKFEELKLKEIKNGRLAMLAFVG 204          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 67/176 (38.07%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  348 WFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSW--YDAGSREYFADPT------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            W PG   PS+LDG  PGD+GFD LGLG  P  L+ + ++ELIH RWAMLAV GI++PE L     ++   W     G   Y   P       T+  ++   + +VE +R           ++ D   K        YPGG  FDP+ + +  P     L+  EIKNGRLA+LA VG
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR----------SMEKDSEKKK-------YPGGA-FDPLGYSK-DPAKFEELKVKEIKNGRLALLAIVG 205          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.119e-21
Identity = 74/226 (32.74%), Postives = 100/226 (44.25%), Query Frame = 3
Query:  336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKW-------------------------------------------FAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSRE------YFADP-----TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRPLWFPG+  P +LDG L GDYGFDP GLG   E L++                                           F + ELIHGRWAMLA  G +  EWL  +      +W DAG  E      Y   P     +TL  +++ ++G++E +R A++      D +  L           YPGG +FDP+      P     L+  EIK+ RLAM+ F+G
Sbjct:   51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL------DSEKRL-----------YPGGKFFDPLGLA-SDPVKKAQLQLAEIKHARLAMVGFLG 252          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.110e-20
Identity = 80/214 (37.38%), Postives = 101/214 (47.20%), Query Frame = 3
Query:  267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            VGR  +   A+K VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+     SW+ AGS+       +Y  + +         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   10 VGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLALA-DDPEAFAELKVKEIKNGRLAMFSMFG 206          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20
Identity = 79/214 (36.92%), Postives = 100/214 (46.73%), Query Frame = 3
Query:  267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            VGR  +    TK VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   28 VGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 224          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19
Identity = 76/205 (37.07%), Postives = 97/205 (47.32%), Query Frame = 3
Query:  294 ATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            A+K VSS      PDR  +   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   29 ASKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 216          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.787e-19
Identity = 71/191 (37.17%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  336 DRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRPL+   F GS PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A                      D  YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--------------GPLGEVEDPIYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19
Identity = 76/228 (33.33%), Postives = 102/228 (44.74%), Query Frame = 3
Query:  225 IPQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWF-PGST-PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            I  +  T K+       G     A    S+  E   PDR  W  P ST  P++L G  PGDYG+D  GL +DPE  K + + E+IH RWA+L   GIL PE L +   ++     W+ AG++       +Y   P  +          VQ+ LMG +EG R    +N G                D  YPG   FDP+      P+    L+  EIKNGRLAM +  G
Sbjct:    6 ISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGG----------PAGEGLDPLYPGES-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSCFG 217          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.789e-19
Identity = 66/183 (36.07%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  366 PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++ VQ+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB4A_ARATH5.367e-2434.07Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB121_HORVU1.726e-2238.64Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.255e-2238.07Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4B_ARATH1.119e-2132.74Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB21_SOYBN2.110e-2037.38Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_SOYBN2.756e-2036.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_CUCSA1.368e-1937.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU1.787e-1937.17Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_CHLMO2.333e-1933.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ORYSJ6.789e-1936.07Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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