CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 8.867e-19 Identity = 66/183 (36.07%), Postives = 88/183 (48.09%), Query Frame = 3 Query: 366 PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ VQ+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 222
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18 Identity = 73/230 (31.74%), Postives = 95/230 (41.30%), Query Frame = 3 Query: 240 FTEKITKCLVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGST----------PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 F K K G V + +P P W+ PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A D+ YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG-------------EGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFG 227
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18 Identity = 78/219 (35.62%), Postives = 100/219 (45.66%), Query Frame = 3 Query: 264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + G G I+ T K VSS PDR + F G P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG +EG R A L T P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG----------GPLGEVTDPL----YPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18 Identity = 72/215 (33.49%), Postives = 99/215 (46.05%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPL--PPDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VG G + + V S + + PDRP + PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AG++ +Y +P ++ VQ+ LMG+VEG R G + L D YPGG FDP+ P+ L+ E+KNGRLAM + G Sbjct: 26 VGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR------VGGGPLGEGL--------DKVYPGGA-FDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFG 224
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18 Identity = 72/215 (33.49%), Postives = 99/215 (46.05%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPL--PPDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VG G + + V S + + PDRP + PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AG++ +Y +P ++ VQ+ LMG+VEG R G + L D YPGG FDP+ P+ L+ E+KNGRLAM + G Sbjct: 26 VGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR------VGGGPLGEGL--------DKVYPGGA-FDPLGLA-DDPDTFAELKVKELKNGRLAMFSMFG 224
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18 Identity = 74/222 (33.33%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 270 GRGGVIVNATKGVSSVCEP----LPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 G G + + T G V PDR + F G PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 24 GEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 223
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18 Identity = 72/192 (37.50%), Postives = 92/192 (47.92%), Query Frame = 3 Query: 333 PDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PDR L+ F G PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AG++ +Y +P+ ++ Q+ LMG VEG R A L T P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 61 PDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 235
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18 Identity = 74/211 (35.07%), Postives = 98/211 (46.45%), Query Frame = 3 Query: 291 NATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 N K VSS PDR + F G +P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 39 NKAKPVSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 227
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18 Identity = 77/224 (34.38%), Postives = 103/224 (45.98%), Query Frame = 3 Query: 264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + G G V + T K VSS PDR + F G +P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 27 ITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.580e-18 Identity = 70/191 (36.65%), Postives = 91/191 (47.64%), Query Frame = 3 Query: 333 PDRPLWF-PGSTP-PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PDRP + P S PS+L G PGDYG+D GL +DPE + E+IH RWAML G PE LE G+ W+ AGS+ +Y +P ++ Q+ LMG+VEG R G + L D YPGG FDP+ P+ L+ E+KNGRLAM + G Sbjct: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR------VGGGPLGEGL--------DPLYPGGA-FDPLGLA-DDPDSFAELKVKELKNGRLAMFSMFG 226 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |