CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 75/224 (33.48%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  264 LVGRGGVIVNATKG----VSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            ++G G + +  T G    V S      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   27 IIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 66/196 (33.67%), Postives = 92/196 (46.94%), Query Frame = 3
Query:  333 PDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR L+       PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG +EG R A     ++++P                    YPGG  FDP+      PE    ++  E+KNGRLAM +  G
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP-------------------LYPGGT-FDPLGLA-DDPEAFADVKVKELKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 67/178 (37.64%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSR-------EYFADPTTLFV--------VQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PS+L+G  PGDYG+D  GL +DPE        E+IHGRWAML   G + PE LE    ++     W+ AGS+       +Y  +P  +           Q+ LMG VEG R   +  PG V    DL           YPGG +FDP+      P     L+  EIKNGRLAM +  G
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PG-VGEGNDL-----------YPGGQYFDPLGLA-DDPTTFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 76/226 (33.63%), Postives = 102/226 (45.13%), Query Frame = 3
Query:  255 TKCLVGRGGVIVNAT----KGVSSVCEPLPPDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            +  L+G   V +  T    K VSS       DR L+       PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     +I++P                    YPGG  FDP+      P+    L+  EIKNGRLAM +  G
Sbjct:   23 SSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP-------------------LYPGGS-FDPLGLAE-RPQAFAELKVKEIKNGRLAMFSMFG 227          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 77/224 (34.38%), Postives = 103/224 (45.98%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T    K VSS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   26 VTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 227          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 73/210 (34.76%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  297 TKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            TK V+S   P   PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   42 TKKVASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 229          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 76/222 (34.23%), Postives = 103/222 (46.40%), Query Frame = 3
Query:  264 LVGRGGVIVNAT--KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T  K V+S      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   27 ITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 73/210 (34.76%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  297 TKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            TK V+S   P   PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   43 TKKVASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 230          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 71/191 (37.17%), Postives = 91/191 (47.64%), Query Frame = 3
Query:  336 DRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRP +   F G TP S+L+G   GDYG+D  GL SDPE      + E+IH RWAML   G L PE L   G+      W+ AG++       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      P+    L+  EIKNGRLAM +  G
Sbjct:   56 DRPKFLGPFSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFG 229          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 70/192 (36.46%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  333 PDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADP--------TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR L+   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y   P          ++  Q+ LMG +EG R A             L   T P     YPGG  FDP+      P+    L+  EIKNGRLAM +  G
Sbjct:   65 PDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----------GPLGEVTDPI----YPGGN-FDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFG 239          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2A_SPIOL3.369e-1833.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE3.369e-1833.67Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_SOLLC3.369e-1837.64Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_WHEAT3.369e-1833.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_TOBAC3.369e-1834.38Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB28_PEA4.400e-1834.76Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_TOBAC4.400e-1834.23Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PEA4.400e-1834.76Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2_PHYPA7.506e-1837.17Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY7.506e-1836.46Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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