CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18 Identity = 68/196 (34.69%), Postives = 92/196 (46.94%), Query Frame = 3 Query: 333 PDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PDR L+ PPS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ E+K GRLAML+ G Sbjct: 52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFGELKVKELKKGRLAMLSMFG 226
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18 Identity = 75/213 (35.21%), Postives = 98/213 (46.01%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPLPPDRPLWF-PGSTP-PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VG G V + T + PDRP + P S PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P ++ Q+ LMG+VEG R G + L D YPGG FDP+ P+ L+ EIKNGRLAM + G Sbjct: 30 VGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR------VGGGPLGEGL--------DPIYPGGA-FDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFG 226
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18 Identity = 76/224 (33.93%), Postives = 102/224 (45.54%), Query Frame = 3 Query: 264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + G G V + T K SS PDR + F G +P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 27 ITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18 Identity = 71/205 (34.63%), Postives = 96/205 (46.83%), Query Frame = 3 Query: 297 TKGVSSVCEPLP----PDRPLWFPG-----STPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLI--ENFSWY-------DAGSREYFAD--PTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 +K VS + L PDR ++ P S P +L+G + GDYG+DP GLG PE + ELIH RWAML AG +IPE L G W+ D + YF P L + +A + + G + I N +D + L +PGG FDP+ + PE +L+ EIKNGRLAM A +G Sbjct: 49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG--LDFEDKL-----------HPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLG 238
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18 Identity = 72/222 (32.43%), Postives = 98/222 (44.14%), Query Frame = 3 Query: 264 LVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGST----------PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 ++G G V + T V +P P W+ PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A G + D+ YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 27 VLGSGRVTMRKT-----VAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18 Identity = 72/222 (32.43%), Postives = 98/222 (44.14%), Query Frame = 3 Query: 264 LVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGST----------PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 ++G G V + T V +P P W+ PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A G + D+ YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 27 VLGSGRVTMRKT-----VAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17 Identity = 65/178 (36.52%), Postives = 84/178 (47.19%), Query Frame = 3 Query: 366 PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PPS+L G PGDYG+D GL +DPE + E+IH WAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A L T P YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 167
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17 Identity = 74/212 (34.91%), Postives = 96/212 (45.28%), Query Frame = 3 Query: 288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 V K VSS PDR + F G P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++I+P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 38 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 227
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17 Identity = 63/178 (35.39%), Postives = 86/178 (48.31%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLES-IGL-IENFSWYDAGSR-------EYFADPTTLFV--------VQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PS+L+G PGDYG+D GL +DPE E+IHGRWAML G + PE L+ +G+ + W+ AGS+ +Y +P + Q+ LMG VEG R + G + + YPGG +FDP+ P L+ EIKNGRLAM + G Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG--------------EGNDLYPGGQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFG 229
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17 Identity = 76/221 (34.39%), Postives = 101/221 (45.70%), Query Frame = 3 Query: 264 LVGRGGVIVNAT-KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 L G G V + T K S PDR + F G P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ +++ Q+ LMG VEG R A +I++P YPGG FDP+ PE L+ E+KNGRLAM + G Sbjct: 27 LFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP-------------------LYPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFG 225 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |