CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 68/196 (34.69%), Postives = 92/196 (46.94%), Query Frame = 3
Query:  333 PDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR L+       PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  E+K GRLAML+  G
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFGELKVKELKKGRLAMLSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.506e-18
Identity = 75/213 (35.21%), Postives = 98/213 (46.01%), Query Frame = 3
Query:  267 VGRGGVIVNATKGVSSVCEPLPPDRPLWF-PGSTP-PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            VG G V +  T   +       PDRP +  P S   PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG+VEG R       G   +   L        D  YPGG  FDP+      P+    L+  EIKNGRLAM +  G
Sbjct:   30 VGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR------VGGGPLGEGL--------DPIYPGGA-FDPLGLA-DDPDAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 76/224 (33.93%), Postives = 102/224 (45.54%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T    K  SS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   27 ITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 71/205 (34.63%), Postives = 96/205 (46.83%), Query Frame = 3
Query:  297 TKGVSSVCEPLP----PDRPLWFPG-----STPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLI--ENFSWY-------DAGSREYFAD--PTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            +K VS   + L     PDR ++ P      S  P +L+G + GDYG+DP GLG  PE    +   ELIH RWAML  AG +IPE L   G        W+       D  +  YF    P  L +  +A +  + G  +  I N   +D +  L           +PGG  FDP+   +  PE   +L+  EIKNGRLAM A +G
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG--LDFEDKL-----------HPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLG 238          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 72/222 (32.43%), Postives = 98/222 (44.14%), Query Frame = 3
Query:  264 LVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGST----------PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            ++G G V +  T     V +P  P    W+               PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     G  +             D+ YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   27 VLGSGRVTMRKT-----VAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 72/222 (32.43%), Postives = 98/222 (44.14%), Query Frame = 3
Query:  264 LVGRGGVIVNATKGVSSVCEPLPPDRPLWFPGST----------PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            ++G G V +  T     V +P  P    W+               PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     G  +             D+ YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   27 VLGSGRVTMRKT-----VAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 65/178 (36.52%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  366 PPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PPS+L G  PGDYG+D  GL +DPE      + E+IH  WAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFG 167          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 74/212 (34.91%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            V   K VSS      PDR  +   F G  P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE     G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++I+P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   38 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 227          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 63/178 (35.39%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLES-IGL-IENFSWYDAGSR-------EYFADPTTLFV--------VQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PS+L+G  PGDYG+D  GL +DPE        E+IHGRWAML   G + PE L+  +G+  +   W+ AGS+       +Y  +P  +           Q+ LMG VEG R   +   G              + +  YPGG +FDP+      P     L+  EIKNGRLAM +  G
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG--------------EGNDLYPGGQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFG 229          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 76/221 (34.39%), Postives = 101/221 (45.70%), Query Frame = 3
Query:  264 LVGRGGVIVNAT-KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            L G G V +  T K   S      PDR  +   F G  P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+        +++  Q+ LMG VEG R A     +I++P                    YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   27 LFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP-------------------LYPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFG 225          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB22_MAIZE7.506e-1834.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_GOSHI7.506e-1835.21Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2G_SOLLC9.803e-1833.93Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB26_ARATH9.803e-1834.63Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_ARATH9.803e-1832.43Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH9.803e-1832.43Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_CUCSA1.280e-1736.52Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB24_PETSP1.672e-1734.91Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_HORVU1.672e-1735.39Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_APIGR1.672e-1734.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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