CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 69/197 (35.03%), Postives = 93/197 (47.21%), Query Frame = 3
Query:  333 PDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   52 PDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  336 DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG+VEG R       G   +   L        D  YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 75/224 (33.48%), Postives = 102/224 (45.54%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T    K +SS      PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+   IKNGRLAM +  G
Sbjct:   27 ITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.184e-17
Identity = 75/224 (33.48%), Postives = 102/224 (45.54%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T    K VSS      P+R  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+  GS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   27 ITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.852e-17
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  336 DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG+VEG R       G   +   L        D  YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 68/194 (35.05%), Postives = 88/194 (45.36%), Query Frame = 3
Query:  333 PDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIE--NFSWYDAGSREYFADP----------------TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR  +   F  +  P +L G  PGDYG+D  GL +DP+    + + ELIH RWA+L   GIL PE L     ++     W+ AG+ + FAD                      VQ+ LMG  E  R     N G      DL        D  YPGG  FDP+      P+    L+  EIKNGRLAM + +G
Sbjct:   36 PDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA-QIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDL--------DTLYPGGP-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSCLG 214          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 68/200 (34.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  309 SSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPTTLF--------VVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            SS  E   P+R  W   +  +  P++L G  PGDYG+D  GL +DPE  K + + ELIH RWAML   G   PE L   G       W+ AG++       +Y  +P+ +          VQ+ LMG +EG R    +N G                D  YPG   FDP+      P+    L+  EIKNGRLA  +  G
Sbjct:   31 SSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGG----------PAGEGLDPLYPGES-FDPLGLA-DDPDTFAELKVKEIKNGRLASFSMFG 214          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 68/192 (35.42%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  333 PDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADP--------TTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDR ++   F G  PPS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y   P          ++  Q+ LMG +EG R A             L   T P     YPGG  FDP+      P+    ++  EIKNGRLAM +  G
Sbjct:   65 PDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----------GPLGEVTDPI----YPGGN-FDPLGLA-DDPDAFADVKVKEIKNGRLAMFSMFG 239          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 68/190 (35.79%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  336 DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG+VEG R       G   +   L        D  YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   25 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 198          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.725e-17
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  E+KNGRLAM +  G
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP-------------------LYPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFG 189          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2B_SOLLC2.184e-1735.03Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB26_PETSP2.184e-1735.79Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_TOBAC2.184e-1733.48Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_NICPL2.184e-1733.48Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB24_SOLLC2.852e-1735.79Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2_DUNTE3.725e-1735.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE3.725e-1734.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY3.725e-1735.42Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_SOLLC3.725e-1735.79Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_PEA3.725e-1734.62Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
back to top