CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.865e-17
Identity = 63/177 (35.59%), Postives = 83/177 (46.89%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AG++       +Y  +P          ++  Q+ LMG +EG R       G   +   L        D  YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR------VGGGPLGEGL--------DPLYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 225          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17
Identity = 73/212 (34.43%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            V   K VSS      PDR  +   F G  P S+L G  PGDYG+D   L +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   39 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17
Identity = 73/219 (33.33%), Postives = 98/219 (44.75%), Query Frame = 3
Query:  270 GRGGVIVNATKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            G   V +  T     V  P   PDR  +   F G +P S+L G  PGDYG+D  GL +DPE      + E+IHGRWAML   G + PE L   G+      W+  GS+       +Y  +P+         ++  Q+ LMG VEG R A     ++++P                    YPGG  FDP+       E    L+  EIKNGRLAM +  G
Sbjct:   29 GDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDAEAFAELKVKEIKNGRLAMFSMFG 225          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 3
Query:  336 DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            DRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG +EG R       G   +   L        D  YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 74/224 (33.04%), Postives = 99/224 (44.20%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G V +  T    K  SS      PDR  +   F G  P S+L G  P DYG+D  GL +DPE      + E+IH RWAML   G + PE     G+      W+ AG++       +Y  +P+         ++  Q+ LMG VEG R A     ++I+P                    YPGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   27 ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAP-SYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 76/219 (34.70%), Postives = 97/219 (44.29%), Query Frame = 3
Query:  264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            + G G   +  T    K VSS      PDR  +   F G  P S+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE     G+      W  AGS+       +Y  +P+         ++  Q+ LMG VEG R A    P  V + P             YPGG  FDP+      PE    L+  E KNGRLAM +  G
Sbjct:   27 ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDP------------LYPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFG 228          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16
Identity = 72/212 (33.96%), Postives = 93/212 (43.87%), Query Frame = 3
Query:  288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            V   K VSS      PDR  +   F G  P S+L G  PGDYG+D  GL +DP       + E+IH RW ML   G + PE     G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A     ++I+P                    YPGG  FDP+      PE    L   EIKNGRLAM +  G
Sbjct:   38 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLA-DDPEAFAELEVKEIKNGRLAMFSMFG 227          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 65/193 (33.68%), Postives = 88/193 (45.60%), Query Frame = 3
Query:  333 PDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCV--DIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PDRP +        PS+L G  PGDYG+D   + +DPE      + E+IH RWAML   G + PE L   GL      W+ AG++       +Y  +P          ++  Q+ LMG +EG R    +  G +   + P L            PGG  FDP+      PE    L+  EIKNGRLAM +  G
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGEGLDPLL------------PGGA-FDPLGLA-DDPEACAELKVKEIKNGRLAMFSMFG 227          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.044e-15
Identity = 58/171 (33.92%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  342 PLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFA-DPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PLWFP +  PSWL+G   GD GFDP GL +DP+  +    AE+ HGR AMLAV G L+P++L   G+     WY+A            +F     +     G                    K    P   YPG   FDP+             +  EIKNGRLA+ A +G
Sbjct:    3 PLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVFEVARG-------------------VKENSDPTTIYPG---FDPLNL------TTDYTKEAEIKNGRLALTALLG 139          

HSP 2 Score: 80.8777 bits (198), Expect = 1.014e-14
Identity = 57/169 (33.73%), Postives = 76/169 (44.97%), Query Frame = 3
Query:  345 LWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            LWFP + PP+ L G  P D GFDPL L +DP++      AE+ HGR AML   G ++PE      L+   +W++AG      D   L  + +A+    E  R                 N  K + D  YPG   FDP+             R  E+KNGRLA+ A  G
Sbjct:  189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPE------LLGKGAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQGGF------------NWQKGELDRSYPG---FDPLNL------TTDYTRAAEVKNGRLALTAVAG 327          

HSP 3 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 58/178 (32.58%), Postives = 76/178 (42.70%), Query Frame = 3
Query:  336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVE------GRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            +R LWFP   PP +L G   GD GFDP GL +DP   +    AE+ H R +MLA+ G L+PE      L+ N +W+    +    D     VV L ++  +E      G  W D                 +   D  YPG   FDP+             +  EIKNGRLAM    G
Sbjct:  370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPE------LLGNGAWFQIWDK---VDFNRFAVVALQVVAPLEYWRGNGGFLWND-----------------EETVDQSYPG---FDPLNL------TTEYTKEAEIKNGRLAMNGMFG 512          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 69/221 (31.22%), Postives = 95/221 (42.99%), Query Frame = 3
Query:  255 TKCLVGRGGVIVNATKGVSSVCEPLPP----DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            T+ + G G + +  T           P    DR L+      +PPS+L G  PGDYG+D  GL +DPE      + E+IH RWA+    G + PE L   G+      W+ AGS+        +  +P+         ++  Q+ LMG VEG   A                +     D  Y GG  FDP+  G   PE    L+  EIKNGRLAM +  G
Sbjct:   21 TRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG--------------GRLGEVVDPLYLGGS-FDPLGLG-DDPERFAELKVKEIKNGRLAMFSMFG 225          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_LEMGI4.865e-1735.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP6.354e-1734.43Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_HORVU6.354e-1733.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_TOBAC1.416e-1635.26Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_PETSP1.416e-1633.04Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_PETSP1.416e-1634.70Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PETSP5.379e-1633.96Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_PINTH1.565e-1533.68Chlorophyll a-b binding protein type I, chloroplas... [more]
LH18_EUGGR2.044e-1533.92Light-harvesting complex I LH38 proteins (Fragment... [more]
CB48_MAIZE3.855e-1431.22Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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