CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.865e-17 Identity = 63/177 (35.59%), Postives = 83/177 (46.89%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AG++ +Y +P ++ Q+ LMG +EG R G + L D YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR------VGGGPLGEGL--------DPLYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 225
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17 Identity = 73/212 (34.43%), Postives = 96/212 (45.28%), Query Frame = 3 Query: 288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 V K VSS PDR + F G P S+L G PGDYG+D L +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 39 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.354e-17 Identity = 73/219 (33.33%), Postives = 98/219 (44.75%), Query Frame = 3 Query: 270 GRGGVIVNATKGVSSVCEP-LPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 G V + T V P PDR + F G +P S+L G PGDYG+D GL +DPE + E+IHGRWAML G + PE L G+ W+ GS+ +Y +P+ ++ Q+ LMG VEG R A ++++P YPGG FDP+ E L+ EIKNGRLAM + G Sbjct: 29 GDARVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP-------------------LYPGGS-FDPLGLA-DDAEAFAELKVKEIKNGRLAMFSMFG 225
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16 Identity = 67/190 (35.26%), Postives = 87/190 (45.79%), Query Frame = 3 Query: 336 DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 DRP + PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P ++ Q+ LMG +EG R G + L D YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYR------VGGGPLGEGL--------DKIYPGGA-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFG 226
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16 Identity = 74/224 (33.04%), Postives = 99/224 (44.20%), Query Frame = 3 Query: 264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + G G V + T K SS PDR + F G P S+L G P DYG+D GL +DPE + E+IH RWAML G + PE G+ W+ AG++ +Y +P+ ++ Q+ LMG VEG R A ++I+P YPGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 27 ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAP-SYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16 Identity = 76/219 (34.70%), Postives = 97/219 (44.29%), Query Frame = 3 Query: 264 LVGRGGVIVNAT----KGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 + G G + T K VSS PDR + F G P S+L G PGDYG+D GL +DPE + E+IH RWAML G + PE G+ W AGS+ +Y +P+ ++ Q+ LMG VEG R A P V + P YPGG FDP+ PE L+ E KNGRLAM + G Sbjct: 27 ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDP------------LYPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFG 228
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.379e-16 Identity = 72/212 (33.96%), Postives = 93/212 (43.87%), Query Frame = 3 Query: 288 VNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWA-----DIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 V K VSS PDR + F G P S+L G PGDYG+D GL +DP + E+IH RW ML G + PE G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A ++I+P YPGG FDP+ PE L EIKNGRLAM + G Sbjct: 38 VTKAKPVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP-------------------LYPGGS-FDPLGLA-DDPEAFAELEVKEIKNGRLAMFSMFG 227
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15 Identity = 65/193 (33.68%), Postives = 88/193 (45.60%), Query Frame = 3 Query: 333 PDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCV--DIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PDRP + PS+L G PGDYG+D + +DPE + E+IH RWAML G + PE L GL W+ AG++ +Y +P ++ Q+ LMG +EG R + G + + P L PGG FDP+ PE L+ EIKNGRLAM + G Sbjct: 53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGEGLDPLL------------PGGA-FDPLGLA-DDPEACAELKVKEIKNGRLAMFSMFG 227
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.044e-15 Identity = 58/171 (33.92%), Postives = 75/171 (43.86%), Query Frame = 3 Query: 342 PLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFA-DPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PLWFP + PSWL+G GD GFDP GL +DP+ + AE+ HGR AMLAV G L+P++L G+ WY+A +F + G K P YPG FDP+ + EIKNGRLA+ A +G Sbjct: 3 PLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVFEVARG-------------------VKENSDPTTIYPG---FDPLNL------TTDYTKEAEIKNGRLALTALLG 139 HSP 2 Score: 80.8777 bits (198), Expect = 1.014e-14 Identity = 57/169 (33.73%), Postives = 76/169 (44.97%), Query Frame = 3 Query: 345 LWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 LWFP + PP+ L G P D GFDPL L +DP++ AE+ HGR AML G ++PE L+ +W++AG D L + +A+ E R N K + D YPG FDP+ R E+KNGRLA+ A G Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPE------LLGKGAWFEAGDS---VDGLKLGFITMAIAAPTEYWRGQGGF------------NWQKGELDRSYPG---FDPLNL------TTDYTRAAEVKNGRLALTAVAG 327 HSP 3 Score: 74.3294 bits (181), Expect = 9.495e-13 Identity = 58/178 (32.58%), Postives = 76/178 (42.70%), Query Frame = 3 Query: 336 DRPLWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVE------GRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 +R LWFP PP +L G GD GFDP GL +DP + AE+ H R +MLA+ G L+PE L+ N +W+ + D VV L ++ +E G W D + D YPG FDP+ + EIKNGRLAM G Sbjct: 370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPE------LLGNGAWFQIWDK---VDFNRFAVVALQVVAPLEYWRGNGGFLWND-----------------EETVDQSYPG---FDPLNL------TTEYTKEAEIKNGRLAMNGMFG 512
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14 Identity = 69/221 (31.22%), Postives = 95/221 (42.99%), Query Frame = 3 Query: 255 TKCLVGRGGVIVNATKGVSSVCEPLPP----DRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 T+ + G G + + T P DR L+ +PPS+L G PGDYG+D GL +DPE + E+IH RWA+ G + PE L G+ W+ AGS+ + +P+ ++ Q+ LMG VEG A + D Y GG FDP+ G PE L+ EIKNGRLAM + G Sbjct: 21 TRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAG--------------GRLGEVVDPLYLGGS-FDPLGLG-DDPERFAELKVKEIKNGRLAMFSMFG 225 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |