CF838320
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14 Identity = 69/220 (31.36%), Postives = 94/220 (42.73%), Query Frame = 3 Query: 270 GRGGVIVNATKGVSSVCEPLPPDRPLWFPGSTP--------PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWL---ESIGLIENFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 GR G + KG +V + + P +T P G PGDYG+D GL +DPE K + + ELIH R +L G++ PE L + I + W+ AG+ Y +P+ + VQ+ LMG VEG R +N G D YPG FDP+ P+ L+ EIKNGRLAM A +G Sbjct: 34 GRAGK--STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGG----------PAGEGLDPLYPGEA-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFACLG 235
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13 Identity = 55/161 (34.16%), Postives = 74/161 (45.96%), Query Frame = 3 Query: 228 PQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPL--PPDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRR 650 PQ K VG G V+ + + S E + PDRP + PS+L G PGDYG+D GL +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P ++ Q+ LMG VEG R Sbjct: 19 PQNELVRK-----VGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR 174
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13 Identity = 55/169 (32.54%), Postives = 78/169 (46.15%), Query Frame = 3 Query: 345 LWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 +WFPG+ PP+ L G P D GFDPL + +DP + +E+ H R +MLA+ G ++PE L+ +W++ G+ D L + +A+ E R N G N K D YPG FDP+ + EIKNGRLAM +G Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPE------LLGKGAWFEVGNS---VDGIKLGFILMAIAAPTEYWRG----NGGF--------NWDKGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLG 298
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12 Identity = 72/214 (33.64%), Postives = 93/214 (43.46%), Query Frame = 3 Query: 267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 VGR + A K VSS PDR + F G P S+L G G L +DPE + E+IH RWAML G + PE L G+ W+ AGS+ +Y +P+ ++ Q+ LMG VEG R A L T P YPGG FDP+ PE + L+ E+KNGRLAM + G Sbjct: 29 VGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEALAELKVKELKNGRLAMFSMFG 217
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12 Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 3 Query: 369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFS---WYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851 PS+L G PGDYG+D GL + PE + E+IH R AM A G + PE L +G + F W+ AG++ +Y +P+ ++ ++ LMG VEG R A + L T P YPG FD + + E L+ E+KNGRLAM + G Sbjct: 70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMG--QGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA----------RGPLGEVTDPL----YPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFG 229 The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bpback to top |