CF838320

Overview
NameCF838320
Unique NameCF838320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838320_ssr118 microsatellite CF838320_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1292 contig Csv1_Contig1292:1..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 69/220 (31.36%), Postives = 94/220 (42.73%), Query Frame = 3
Query:  270 GRGGVIVNATKGVSSVCEPLPPDRPLWFPGSTP--------PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWL---ESIGLIENFSWYDAGSR-------EYFADPTTL--------FVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            GR G   +  KG  +V +        + P +T         P    G  PGDYG+D  GL +DPE  K + + ELIH R  +L   G++ PE L   + I   +   W+ AG+         Y  +P+ +          VQ+ LMG VEG R    +N G                D  YPG   FDP+      P+    L+  EIKNGRLAM A +G
Sbjct:   34 GRAGK--STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR----VNGG----------PAGEGLDPLYPGEA-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFACLG 235          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 55/161 (34.16%), Postives = 74/161 (45.96%), Query Frame = 3
Query:  228 PQKRFTEKITKCLVGRGGVIVNATKGVSSVCEPL--PPDRPLWFP--GSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRR 650
            PQ     K     VG  G  V+  + + S  E +   PDRP +        PS+L G  PGDYG+D  GL +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P          ++  Q+ LMG VEG R
Sbjct:   19 PQNELVRK-----VGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR 174          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 55/169 (32.54%), Postives = 78/169 (46.15%), Query Frame = 3
Query:  345 LWFPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFSWYDAGSREYFADPTTLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            +WFPG+ PP+ L G  P D GFDPL + +DP +      +E+ H R +MLA+ G ++PE      L+   +W++ G+     D   L  + +A+    E  R     N G         N  K   D  YPG   FDP+       +        EIKNGRLAM   +G
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPE------LLGKGAWFEVGNS---VDGIKLGFILMAIAAPTEYWRG----NGGF--------NWDKGTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLG 298          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 72/214 (33.64%), Postives = 93/214 (43.46%), Query Frame = 3
Query:  267 VGRGGVIVNATKGVSSVCEPLPPDRPLW---FPGSTPPSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGL-IENFSWYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            VGR  +   A K VSS      PDR  +   F G  P S+L G   G        L +DPE      + E+IH RWAML   G + PE L   G+      W+ AGS+       +Y  +P+         ++  Q+ LMG VEG R A             L   T P     YPGG  FDP+      PE +  L+  E+KNGRLAM +  G
Sbjct:   29 VGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAP-SYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG----------GPLGEVTDPI----YPGGS-FDPLGLA-DDPEALAELKVKELKNGRLAMFSMFG 217          
BLAST of CF838320 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.763e-12
Identity = 59/179 (32.96%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  369 PSWLDGRLPGDYGFDPLGLGSDPELLKWFAQAELIHGRWAMLAVAGILIPEWLESIGLIENFS---WYDAGSR-------EYFADPT--------TLFVVQLALMGWVEGRRWADIINPGCVDIQPDLPNKTKPKPDVGYPGGIWFDPMMWGRGSPEPVMVLRTXEIKNGRLAMLAFVG 851
            PS+L G  PGDYG+D  GL + PE      + E+IH R AM A  G + PE L  +G  + F    W+ AG++       +Y  +P+         ++  ++ LMG VEG R A          +  L   T P     YPG   FD +     + E    L+  E+KNGRLAM +  G
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMG--QGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA----------RGPLGEVTDPL----YPGS--FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFG 229          
The following BLAST results are available for this feature:
BLAST of CF838320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2_DUNSA6.576e-1431.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR1.122e-1334.16Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
LH15_EUGGR3.263e-1332.54Light-harvesting complex I LH35 proteins (Fragment... [more]
CB22_SOYBN1.240e-1233.64Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO2.763e-1232.96Chlorophyll a-b binding protein AB10, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06D14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838320 ID=CF838320; Name=CF838320; organism=Citrus sinensis; type=EST; length=852bp
CGACTGAGCAAACCTTTGTCATCTTCATTCTCATCCATGGCCCTAGCCAT
TGCTTCTACAGCACTTTCGACCCTCCCATTCAGGTCACATACACAACAAT
TTCTTTAATTATGAAGAATTATTATTATTACATTGAATGGATATAGATTT
ATTGTCTTTCATGCATTGAAACAATTCTCCTGCTATTTTCCTGTTCAATC
GTGAACAGCAGCAGGTGCAGGGACATACCTCAGAAACGTTTTACAGAGAA
GATTACAAAATGCCTAGTGGGAAGAGGTGGTGTGATAGTGAATGCAACAA
AAGGAGTGTCAAGTGTTTGTGAACCGCTCCCTCCGGACAGACCATTGTGG
TTCCCTGGCAGCACACCGCCCTCTTGGCTTGATGGGAGGCTTCCGGGAGA
TTATGGCTTCGATCCTCTTGGATTAGGGTCTGATCCAGAGTTGCTTAAAT
GGTTTGCTCAAGCTGAGCTAATTCACGGCAGGTGGGCAATGCTGGCTGTG
GCTGGAATCCTCATACCAGAATGGCTTGAAAGCATTGGCCTCATTGAGAA
CTTCTCATGGTACGATGCTGGTTCTCGTGAATACTTTGCAGACCCCACAA
CTTTATTTGTGGTTCAGTTGGCCCTGATGGGATGGGTAGAAGGCAGAAGA
TGGGCTGATATAATTAATCCAGGATGTGTTGACATTCAACCAGATCTCCC
AAACAAGACAAAGCCGAAGCCAGATGTTGGCTACCCTGGTGGGATATGGT
TTGATCCCATGATGTGGGGAAGAGGGTCCCCAGAGCCTGTGATGGTGTTG
AGGACTANGGAAATAAAGAATGGGCGTCTTGCTATGCTAGCTTTCGTTGG
CT
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