CF838344

Overview
NameCF838344
Unique NameCF838344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_ECO27 (Inner membrane protein oxaA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=oxaA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GW  FIS+ +  +LK +   +       ++GF+II++T IV+   +PLTK Q  S   M+ LQPKI+A+++R   +++RI  E   LY+   VNPL GC P L  +P+++ LY  L
Sbjct:  331 GWLWFISQPLFKLLKWIHSFVG------NWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYML 440          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_ECO24 (Inner membrane protein oxaA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=oxaA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GW  FIS+ +  +LK +   +       ++GF+II++T IV+   +PLTK Q  S   M+ LQPKI+A+++R   +++RI  E   LY+   VNPL GC P L  +P+++ LY  L
Sbjct:  331 GWLWFISQPLFKLLKWIHSFVG------NWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYML 440          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_BRAJA (Inner membrane protein oxaA OS=Bradyrhizobium japonicum GN=oxaA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 44/117 (37.61%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPY-SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GWF FI++ M         G+D  +  + ++G +I+L+TVIVK+  FPL  K   S   M+++QP+++A+++RY  ++ + Q E   +YR+  +NP+AGCLP +  IPV+  LY+ L
Sbjct:  369 GWFYFITKPMFL-------GLDFFYRFFGNFGISILLVTVIVKLLFFPLANKSYASMAKMKSIQPQLQALKERYPDDKVKQQQEMMEIYRKEKINPVAGCLPVVIQIPVFFSLYKVL 478          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA1_BACSU (Membrane protein oxaA 1 OS=Bacillus subtilis GN=oxaA1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 43/115 (37.39%), Postives = 74/115 (64.35%), Query Frame = 3
Query:  315 ISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            +SE + +V K+  D         +YG +IIL+T+++++   PL  KQ+ S+ AMQ LQP+++ ++++Y+      Q+++Q ET  L+++ GVNPLAGC P L  +P+ IG Y A+
Sbjct:   46 LSELITYVAKLTGD---------NYGLSIILVTILIRLLILPLMIKQLRSSKAMQALQPEMQKLKEKYSSKDQKTQQKLQQETMALFQKHGVNPLAGCFPILIQMPILIGFYHAI 151          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_ERWCT (Inner membrane protein oxaA OS=Erwinia carotovora subsp. atroseptica GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GW  FIS+ +  +LK L   I       ++GF+II +T IV+   +PLTK Q  S   M+ LQPK++A+++R   +++R+  E   LY+   VNPL GCLP +  +P+++ LY  L
Sbjct:  329 GWLWFISQPLFKLLKFLHGFIG------NWGFSIIAITFIVRGVMYPLTKAQYTSMAKMRLLQPKLQAMRERIGDDKQRMSQEMMALYKSEKVNPLGGCLPLVIQMPIFLALYYML 438          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_EDWI9 (Inner membrane protein oxaA OS=Edwardsiella ictaluri (strain 93-146) GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GW  FIS+ +  +L+++   +       ++GFAII++T IV+   +PLTK Q  S   M+ LQPK++A+++R   +++R+  E   LY+   VNPL GC P L  +P+++ LY  L
Sbjct:  326 GWLWFISQPLFKLLQLIHSFVG------NWGFAIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDDKQRMSQEMMALYKTEKVNPLGGCFPLLIQMPIFLALYYML 435          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_BORRA (Inner membrane protein oxaA OS=Borrelia recurrentis (strain A1) GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 40/114 (35.09%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  312 FISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 653
            F+   M+ +++I  + I       ++G +I+ LT++V++  FPLT K   +T  +  LQPK+K IQ ++  + +R+  E  +LYR+ GVNP+ GC P L  +PV+  LY  ++N
Sbjct:  322 FLQVPMQLIMQIFYNVIP------NWGLSIMFLTIVVRILIFPLTFKSFRATAELSKLQPKMKEIQVKFKSDPKRLNEEMGKLYREEGVNPIGGCFPILLQLPVFFALYGLVNN 429          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_BORGA (Inner membrane protein oxaA OS=Borrelia garinii GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.496e-16
Identity = 40/118 (33.90%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  303 WFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 656
            W+  I   M+ V+++  D I       ++G +II LT++V++  FPLT K   +T  +  LQPK+K +Q ++  + +++  E  RLY++ GVNPL GC P +  +P++  LY  ++N+
Sbjct:  322 WY-LIQVPMQMVMQVFYDVIP------NWGLSIIFLTIVVRILIFPLTFKGFRATAELSKLQPKMKELQVKFKHDPKKLNEEMGRLYKEEGVNPLGGCFPVILQLPIFFALYSLVNNL 432          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_PHOPR (Inner membrane protein oxaA OS=Photobacterium profundum GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  300 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 647
            GW  FI+  +  +L  ++  +       ++G AI++LT IV+ A +PLTK Q  S   M+ LQPK+ A+++R   +++R+  E   LY++  VNPL GCLP +  +P++I LY +L
Sbjct:  326 GWLWFIASPLHKLLSFIQSIVG------NWGLAIMMLTFIVRGAMYPLTKAQYTSMAKMRMLQPKLTAMRERLGDDRQRMSQEMMELYKKEKVNPLGGCLPIVLQMPIFIALYWSL 435          
BLAST of CF838344 vs. ExPASy Swiss-Prot
Match: OXAA_PEDPA (Membrane protein oxaA OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=oxaA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  384 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF 689
            +YG+ II+ T+I+++   PL   Q  +T+    LQPK+K +QQ+Y    A +Q++++ E  +LY +AGVNP+AGCLP +  +PV   LY A+S      +L EG F
Sbjct:   58 NYGWGIIVFTIIIRIIILPLMIYQTRTTMKTAELQPKLKQLQQKYSSRDAESQQKLREEQQKLYAEAGVNPMAGCLPLIIQLPVMYALYAAVSRTQ---VLKEGTF 160          
The following BLAST results are available for this feature:
BLAST of CF838344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
OXAA_ECO271.145e-1638.79Inner membrane protein oxaA OS=Escherichia coli O1... [more]
OXAA_ECO241.145e-1638.79Inner membrane protein oxaA OS=Escherichia coli O1... [more]
OXAA_BRAJA1.145e-1637.61Inner membrane protein oxaA OS=Bradyrhizobium japo... [more]
OXAA1_BACSU1.145e-1637.39Membrane protein oxaA 1 OS=Bacillus subtilis GN=ox... [more]
OXAA_ERWCT1.496e-1638.79Inner membrane protein oxaA OS=Erwinia carotovora ... [more]
OXAA_EDWI91.496e-1637.07Inner membrane protein oxaA OS=Edwardsiella ictalu... [more]
OXAA_BORRA1.496e-1635.09Inner membrane protein oxaA OS=Borrelia recurrenti... [more]
OXAA_BORGA1.496e-1633.90Inner membrane protein oxaA OS=Borrelia garinii GN... [more]
OXAA_PHOPR1.954e-1637.07Inner membrane protein oxaA OS=Photobacterium prof... [more]
OXAA_PEDPA1.954e-1640.57Membrane protein oxaA OS=Pediococcus pentosaceus (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838344 ID=CF838344; Name=CF838344; organism=Citrus sinensis; type=EST; length=748bp
CGAAAACTCTGACCTTTTAATCCCCGTTCGTCGGCACACCACTCCCTTCA
CCATCCTCGTCACTCTCTCGCCACGGGCTCCACCGGCTTCCTAACCGTAG
ACTCGCCTCCACCAGAGTTAGACTCAGCTTCCAAGAAATTCCCCCAATTC
TCTCCCTCGACTCTTCTATCGATCTCAACTCAGTTTTTAGTCGAACTGAG
AGCTTGCTTTACACGCTGGCAGACGCTGCCGTTTCACTTGATTCTGCTTC
TGGCGGAGCTGCCTCCACGTCAGCTGATGGGGCTACGCAGAAAAACGGCG
GCTGGTTCGGTTTTATCTCTGAAGCTATGGAATTCGTTCTCAAGATATTG
AAGGATGGGATTGATGCTGTTCATGTGCCGTATTCATATGGTTTTGCAAT
AATTTTGTTGACAGTTATTGTTAAAGTTGCCACATTTCCTTTAACAAAGA
AACAGGTGGAATCAACATTAGCAATGCAAAACCTTCAACCTAAGATCAAA
GCTATTCAACAAAGATATGCTGGCAATCAGGAAAGAATACAGCTTGAGAC
ATCACGTTTATACAGGCAGGCTGGGGTTAATCCATTAGCAGGTTGTTTGC
CAACATTGGCTACTATACCAGTCTGGATAGGTCTCTATCAAGCTCTTTCA
AATGTGGCAAATGAGGGTTTGTTAACAGAAGGTTTCTTTGGGATACCCTC
ATTGTCTGGGCCAACTACGATTGCTGCTCGACAAAGTGGATCTGGCAT
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