CF838347

Overview
NameCF838347
Unique NameCF838347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: HUB1_DEBHA (Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.461e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 243
            MIEV+ NDRLGKK++VKC   DTIGDLKK+++ Q GT  +KI ++K Y +YKDHITL DYE+H+G   ELYYS
Sbjct:    1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDYEVHNGFNFELYYS 73          
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: HUB1_CANGA (Ubiquitin-like modifier HUB1 OS=Candida glabrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYS 243
            MIEV++NDRLGKK+RVKC EDDT+GD KK+++ Q G +  KI +QK  ++ KDHITL DYE+HD   LELYYS
Sbjct:    1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDYEVHDNTNLELYYS 73          
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: HUB1_YEAST (Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae GN=HUB1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 240
            MIEVV+NDRLGKKVRVKC  +D++GD KK+++ Q GT+ +KI +QK  ++ KDHI+L+DYE+HD   LELYY
Sbjct:    1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 72          
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: HUB1_KLULA (Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis GN=HUB1 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGT-RADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 240
            MIEV++NDRLGKKV VKC  +DT+GD KK+++ Q GT  A KI +QK  ++ KDHITL+DYE+HDG  LELYY
Sbjct:    1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLEDYEVHDGTNLELYY 73          
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: UBL5_DICDI (Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.920e-19
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKD--------------YEIHDGMGLELYYS 243
            MIEVV NDRLG KVRVK N DDTIGDLKK+++AQ G +A+KIR+QK Y+I+KD     +              YEIHDG GLELYY+
Sbjct:    1 MIEVVCNDRLGNKVRVKVNSDDTIGDLKKVLSAQIGIKAEKIRLQKSYSIFKDRNNNNNYNNYNNNNNNYYYYYEIHDGDGLELYYN 87          
BLAST of CF838347 vs. ExPASy Swiss-Prot
Match: HUB1_ASHGO (Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   25 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIHDGMGLELYY 240
            MIEV++NDRLGKK+RVKC   D++GDLKK++A Q GT   K+ + K     KDHI+L DYE+HDG  LELYY
Sbjct:    1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDYEVHDGTYLELYY 72          
The following BLAST results are available for this feature:
BLAST of CF838347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HUB1_DEBHA6.461e-2263.01Ubiquitin-like modifier HUB1 OS=Debaryomyces hanse... [more]
HUB1_CANGA4.188e-2163.01Ubiquitin-like modifier HUB1 OS=Candida glabrata G... [more]
HUB1_YEAST7.898e-2061.11Ubiquitin-like modifier HUB1 OS=Saccharomyces cere... [more]
HUB1_KLULA7.898e-2063.01Ubiquitin-like modifier HUB1 OS=Kluyveromyces lact... [more]
UBL5_DICDI3.920e-1957.47Ubiquitin-like protein 5 OS=Dictyostelium discoide... [more]
HUB1_ASHGO3.318e-1859.72Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06E24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838347 ID=CF838347; Name=CF838347; organism=Citrus sinensis; type=EST; length=548bp
GGAAAATCAAAACAGGAGACAAAGATGATTGAGGTGGTGCTGAACGACAG
GCTCGGGAAGAAGGTGCGCGTGAAGTGCAACGAAGACGACACCATAGGCG
ACTTGAAGAAGCTGGTGGCGGCTCAGACCGGGACTCGAGCCGACAAGATT
CGGATTCAGAAGTGGTACAACATCTACAAGGACCACATCACTCTCAAGGA
CTACGAGATTCACGACGGCATGGGCCTCGAACTCTATTACAGCTAAATCC
ACCGTTAAATATATATGCTGCTGCAAGCAGTCAATACTACTAGGAACCAT
ATGCCATAATAAGCAAGGGGTATTGGAAGATGCGGCAGGGCCAACTTTAC
TAATACTGTCTTGTAAGAAAAAATTTGTGAAGACTTGTAAAAACTTATTT
GTGGTTATGTAACATATCTGGGATCTGGACTTACTCTCCATTTTGAATGG
TGTTTAGATCTTTATCAAGGTATTGAGGTACCACATACTTGTCAGTCCAT
TAGGCTGATAGAATTTTGTGAATACCTTGGCTAAAAAAAAAAAAAAAA
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