CF838385

Overview
NameCF838385
Unique NameCF838385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838385 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  138 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVGQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 440
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV + PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CF838385 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 2.423e-25
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 3
Query:  138 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVGQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 440
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+ +D +LG+VIQLQGDQR  V  FL Q   ++K+ IKIHGF
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CF838385 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.275e-22
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  204 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVGQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHGF 440
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV + PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CF838385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_DROME8.329e-2653.47Protein translation factor SUI1 homolog OS=Drosoph... [more]
SUI1_SCHPO2.423e-2557.43Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK3.275e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838385 ID=CF838385; Name=CF838385; organism=Citrus sinensis; type=EST; length=517bp
TTGATTCGCAATCTCTCTTCTTAAGCTAAGAGCAATTTAAGTGAATTGAA
GCCAATTTCTTGCTGGTTACGGACTCTTTGACACTCCAGCAACCAAGTTT
CATGTCTGAATTTGACACCCAGATTCCATCTGCCTTTGATCCCTTTGCTG
AGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAAAGATTATGTGCATATT
CGCGTGCAGCAACGTAATGGGAGGAAAAGCCTGACAACTGTGCAAGGGTT
GAAGAAAGAATTCAGCTACAACAAGATTCTCAAGGACCTCAAGAAAGAGT
TCTGCTGTAATGGTACTGTTGGACAGGACCCTGAGTTAGGCCAGGTCATA
CAGCTTCAGGGGGACCAGAGGAAGAATGTGTCCACCTTCCTCGTTCAGGC
TGGAATTGTGAAGAAGGAATTCATCAAAATTCATGGTTTCTAAATAGTGG
GAGCCAAGTTGCTATATGTTGTTTATCCATCTCCAACTATTGGCAGCAAA
AAGGATATGATCTATAT
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