CF838389

Overview
NameCF838389
Unique NameCF838389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  119 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            YRG+RQRPWGKWAAEIRDP+K  RVWLGTF+              R RG+KAKLNF
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 2
Query:    2 KSHPKQP-LKVKNEKAEDSSNKAARVEGKEK-KTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K+H ++  +   + +  +SS  A + EG  K + ++ +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AKLNF
Sbjct:   95 KNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.129e-14
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  104 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   85 LRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  107 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   74 VEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   12 LKGGNVKTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   74 VEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   12 LKGGNVKTNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 2
Query:   32 KNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K  K   +  KA  V    +K++ VR   YRG+R+RPWG++AAEIRDP K  RVWLG+FNT             R RG KA  NF
Sbjct:   27 KGVKKRKNVTKALAVNDGGEKSKEVR---YRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 46/144 (31.94%), Postives = 67/144 (46.53%), Query Frame = 2
Query:  104 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISSLESFLGLEPLMSQPS 535
            V++  +RG+R+RPWG++AAEIRDP+K  RVWLGTF++            + +RG KAK NF                 P P L   RF  I         P++      +  Q   + +    S   S++ESF G  P   +P+
Sbjct:   23 VKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF----------PIDSSSPPPPNL---RFNQIRNQNQNQVDPFMDHRLFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPA 153          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 40/95 (42.11%), Postives = 49/95 (51.58%), Query Frame = 2
Query:    2 KSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +S  +Q   VK+E        A      EKK        +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT             ++RG  A  NF
Sbjct:   91 ESKKRQKRAVKSESTVSPVVSATTTTTGEKK--------FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   56 SNKAARVEGKEKK---------TQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            S+K   ++ K KK         T   RK  +RG+RQRPWGKWAAEIRDP + VRVWLGTF+T             ++RG  A+LNF
Sbjct:   59 SDKEKPMKKKRKKRVVTVPVVVTTATRK--FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142          
The following BLAST results are available for this feature:
BLAST of CF838389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ABR1_ARATH2.751e-1462.50Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH3.593e-1443.30Ethylene-responsive transcription factor ERF109 OS... [more]
EF114_ARATH6.129e-1457.38Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH1.045e-1358.33Ethylene-responsive transcription factor ERF113 OS... [more]
ERF4_TOBAC1.972e-1249.30Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.972e-1249.30Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF77_ARATH2.575e-1245.88Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF82_ARATH3.363e-1231.94Ethylene-responsive transcription factor 3 OS=Arab... [more]
CRF2_ARATH3.363e-1242.11Ethylene-responsive transcription factor CRF2 OS=A... [more]
CRF1_ARATH3.363e-1246.51Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838389 ID=CF838389; Name=CF838389; organism=Citrus sinensis; type=EST; length=811bp
CAAATCCCACCCTAAGCAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAG
ATTCAAGCAATAAAGCTGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAG
CGAGTTCGCAAGAACGTGTACAGAGGAATACGGCAGAGGCCGTGGGGAAA
ATGGGCAGCTGAAATTAGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCG
GCACTTTCAACACAGCCGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCC
AAGCGTATCCGCGGCGACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCC
GCCAATAGCTCCACCCCCAGCTAAGAAACGCTGCATGCCATCCCCTGAGT
TGACTCAGCCGAGATTTGAAACCATCGGAACCCCACCGGCTCCGGCGCCG
TCCCCGTGGGTGGGGTTTGGGTATCAGAATGAGTTTTATCAACCCAGGGC
AGTAGACGACGAGTTTGAGCTGAGCCAGCAAATTTCGAGCTTGGAATCGT
TTTTGGGATTGGAGCCATTAATGAGTCAGCCGAGTGGAAACGGTGCTGGT
GGGTATGACTCGGTGGACTTTTGGATGCTTGATGACGTGGCGGCGACTCA
GCAGCTGAACAGCAATCAGTTCTTGTGTTAGGAAAAATAATAATAAACGA
ATTGAGTTGTGGCCGTGCTGTGTGTTCGTGTGGGTCTGTGTATTGAGTTA
TAGTGTTTAATGCTGTTTATGTAGTTTTGATTTTGTGTTTATGTTGTTAA
TGACTTTGTTTATTTTAATTTGTGTTTTATGTTGTTAATGACTCGATACT
TAATTACGTAA
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