CF838389

Overview
NameCF838389
Unique NameCF838389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838389_ssr292 microsatellite CF838389_ssr292:292..303. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 2
Query:   44 AEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            AE++   A +  G     Q+  +  YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T             ++RG KAKLNF
Sbjct:   69 AEENKPPATKASGSHAPRQKGMQ--YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 44/94 (46.81%), Postives = 50/94 (53.19%), Query Frame = 2
Query:   14 KQPLKVKNEKAEDSSNKAARVEGKE--KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K PLK+      +    AA     E  K      K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T             R+RG KA LNF
Sbjct:  119 KPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 2
Query:   23 LKVKNEKAEDSSNKAARVEGKEKKTQRVRKN----VYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            L V N +++  S+K+ + E  EKKT+R R +    VYRG+R R WGKW +EIR+P K  R+WLGTF T              I+G  A LNF
Sbjct:   16 LLVPNSESDSVSDKS-KAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNF 106          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 43/88 (48.86%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   41 KAEDSSNKAARVEGKEKKT-----QRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K E + N  A +E K KK        V+   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct:   87 KVEPTENFTA-MEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 41/87 (47.13%), Postives = 46/87 (52.87%), Query Frame = 2
Query:   29 VKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            VK EK    S      +GK           YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct:  128 VKKEKTSPVSAAVTAAKGKH----------YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   80 GKEKKTQRVRKNV-YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            GK      +RK V +RG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   19 GKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   95 TQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            T   R+  YRG+R+RPWG++AAEIRDP+K  RVWLGTF+T            + +RG KAK NF
Sbjct:    4 TTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 2
Query:    5 SHPKQPLKVKNEKAEDSSNKAA---RVEGKEKKTQRVRKNV-YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETIGT 382
            S+ ++ L+++ E +  SS   +         KKT+R  +   YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +             ++RG KA LNF              R     ++ QP+  T  T
Sbjct:   65 SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTDVPQPQGTTTST 195          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.180e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:   14 KQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            ++ L   +++ +  ++   R   K   + +++K  +RG+RQRPWGKWAAEIRDP +  R+WLGTF T             R+RG  A  NF
Sbjct:   92 RKRLSSSSDETQSPASSRQRPNNKVSVSGQIKK--FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 2
Query:   83 KEKKTQRVR-----KNVYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            K++  Q+V      K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T             ++RG KA +NF
Sbjct:  121 KQEVVQKVELAPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194          
The following BLAST results are available for this feature:
BLAST of CF838389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ERF99_ARATH4.392e-1246.34Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF102_ARATH4.392e-1246.81Ethylene-responsive transcription factor 5 OS=Arab... [more]
DREB3_ARATH5.737e-1243.48Dehydration-responsive element-binding protein 3 O... [more]
EF101_ARATH7.492e-1248.86Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH7.492e-1247.13Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF80_ARATH9.785e-1250.00Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF81_ARATH1.669e-1151.56Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF107_ARATH2.180e-1134.35Ethylene-responsive transcription factor ERF107 OS... [more]
CRF3_ARATH2.180e-1137.36Ethylene-responsive transcription factor CRF3 OS=A... [more]
ERF5_NICSY2.847e-1150.00Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838389 ID=CF838389; Name=CF838389; organism=Citrus sinensis; type=EST; length=811bp
CAAATCCCACCCTAAGCAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAG
ATTCAAGCAATAAAGCTGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAG
CGAGTTCGCAAGAACGTGTACAGAGGAATACGGCAGAGGCCGTGGGGAAA
ATGGGCAGCTGAAATTAGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCG
GCACTTTCAACACAGCCGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCC
AAGCGTATCCGCGGCGACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCC
GCCAATAGCTCCACCCCCAGCTAAGAAACGCTGCATGCCATCCCCTGAGT
TGACTCAGCCGAGATTTGAAACCATCGGAACCCCACCGGCTCCGGCGCCG
TCCCCGTGGGTGGGGTTTGGGTATCAGAATGAGTTTTATCAACCCAGGGC
AGTAGACGACGAGTTTGAGCTGAGCCAGCAAATTTCGAGCTTGGAATCGT
TTTTGGGATTGGAGCCATTAATGAGTCAGCCGAGTGGAAACGGTGCTGGT
GGGTATGACTCGGTGGACTTTTGGATGCTTGATGACGTGGCGGCGACTCA
GCAGCTGAACAGCAATCAGTTCTTGTGTTAGGAAAAATAATAATAAACGA
ATTGAGTTGTGGCCGTGCTGTGTGTTCGTGTGGGTCTGTGTATTGAGTTA
TAGTGTTTAATGCTGTTTATGTAGTTTTGATTTTGTGTTTATGTTGTTAA
TGACTTTGTTTATTTTAATTTGTGTTTTATGTTGTTAATGACTCGATACT
TAATTACGTAA
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