CF838389

Overview
NameCF838389
Unique NameCF838389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   50 DSSNKAARVEGKEKKTQRVRKNV----YRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            +SS+     +   KK +R  + V    YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +             ++RG KA LNF
Sbjct:   83 NSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNF 166          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  119 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLN 283
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT            K++ G +AKLN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 2
Query:   41 KAEDSSNKAARVEGKEKKTQRV----------RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            + E SS+ AAR +GK K+ + V          +   YRG+RQRPWGK+AAEIRDP    R+WLGTF T              ++G KA  NF
Sbjct:   70 QGESSSSTAAR-KGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 2
Query:   20 PLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            P K +     DS+ +   V G+ +K        YRG+RQRPWGKWAAEIRDP +  R+WLGTF T             ++RG  A  NF
Sbjct:   91 PTKDRKRINVDSTVQKPSVSGQNQKK-------YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  119 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   68 ARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            A V G+   +   ++  +RG+R+RPWG++AAEIRDP+K  RVWLGTF++            + +RG KAK NF
Sbjct:   11 APVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNF 83          
BLAST of CF838389 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  119 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 286
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF 80          
The following BLAST results are available for this feature:
BLAST of CF838389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EF106_ARATH4.856e-1144.05Ethylene-responsive transcription factor ERF106 OS... [more]
DRE2G_ARATH4.856e-1152.73Dehydration-responsive element-binding protein 2G ... [more]
CRF6_ARATH4.856e-1142.39Ethylene-responsive transcription factor CRF6 OS=A... [more]
CRF4_ARATH4.856e-1141.57Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF79_ARATH6.342e-1155.36Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF3_TOBAC6.342e-1143.84Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF78_ARATH8.284e-1155.36Ethylene-responsive transcription factor 4 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838389 ID=CF838389; Name=CF838389; organism=Citrus sinensis; type=EST; length=811bp
CAAATCCCACCCTAAGCAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAG
ATTCAAGCAATAAAGCTGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAG
CGAGTTCGCAAGAACGTGTACAGAGGAATACGGCAGAGGCCGTGGGGAAA
ATGGGCAGCTGAAATTAGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCG
GCACTTTCAACACAGCCGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCC
AAGCGTATCCGCGGCGACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCC
GCCAATAGCTCCACCCCCAGCTAAGAAACGCTGCATGCCATCCCCTGAGT
TGACTCAGCCGAGATTTGAAACCATCGGAACCCCACCGGCTCCGGCGCCG
TCCCCGTGGGTGGGGTTTGGGTATCAGAATGAGTTTTATCAACCCAGGGC
AGTAGACGACGAGTTTGAGCTGAGCCAGCAAATTTCGAGCTTGGAATCGT
TTTTGGGATTGGAGCCATTAATGAGTCAGCCGAGTGGAAACGGTGCTGGT
GGGTATGACTCGGTGGACTTTTGGATGCTTGATGACGTGGCGGCGACTCA
GCAGCTGAACAGCAATCAGTTCTTGTGTTAGGAAAAATAATAATAAACGA
ATTGAGTTGTGGCCGTGCTGTGTGTTCGTGTGGGTCTGTGTATTGAGTTA
TAGTGTTTAATGCTGTTTATGTAGTTTTGATTTTGTGTTTATGTTGTTAA
TGACTTTGTTTATTTTAATTTGTGTTTTATGTTGTTAATGACTCGATACT
TAATTACGTAA
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