CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.030e-36
Identity = 71/156 (45.51%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEI 545
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+  ++W++EL+   + N+V+ +AGNK+DL   R V+ ++  A +++ GL F+ETSA  ATN+   F  I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTI 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.049e-35
Identity = 84/198 (42.42%), Postives = 115/198 (58.08%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAP------NPSGMVLM-DRP--GERTASASCCS 644
            KL+L+GD   GKS  +LRF    +++   STIG  F  +T+ V   TVK +IWDTAGQER+ ++   YYRGA   IIVYDIT+  SF   K+W+ E+    N ++   L GNK DL + R V    AQAYAQE G+ F+ETSAK + NV + F  ++  + + +          PS +V M  RP   E+  S+ CCS
Sbjct:   10 KLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCS 207          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.049e-35
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 563
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   + NMV+ L GNK+DL   R V  EE +A+A+E+GL FMETSAKTA NV + +   AK + R
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYR 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.370e-35
Identity = 79/190 (41.58%), Postives = 120/190 (63.16%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVN--------DIFYEIAKRLPRVQPAPNPSGMVLMDRPGERT 623
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++ YDIT + +F+  ++W++EL+   + N+V+ LAGNK+DL   R V+ ++ QA  ++ GL F+ETSA  A NV+        DI++ I+K+    Q A   + +     PG+ T
Sbjct:   14 KMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTAL-----PGQGT 198          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.370e-35
Identity = 79/196 (40.31%), Postives = 118/196 (60.20%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN----PSGMVLMDRP---GERTASASCCS 644
            K +++GD+G GKS L+ +F + +F+     TIG  F ++ + VN+  +K +IWDTAGQER+ ++   YYRGAA A++VYDIT + ++     W+ + +   NPN V+ L GNK DL   R VT EEA A+A++NGL F+E+SAKT  NV + F   AK + +     N    P G +  + P    ++   AS CS
Sbjct:   10 KYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPDGGITKNPPQTITDKPQDASKCS 205          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RABJ_DICDI (Ras-related protein RabJ OS=Dictyostelium discoideum GN=rabJ PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 75/164 (45.73%), Postives = 109/164 (66.46%), Query Frame = 3
Query:   66 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            ++ +K+VLLG    GK++L LR+V G F +   STIGA+F ++T+ +    +K+ IWD+AGQ+R+ SLA +YYRGA  AI+V+DIT Q +F+  K WV+EL+A     ++M L GNK DL   R+V +E A+ YA E    ++ETSAK    V  +F EI K+L
Sbjct:    7 SMESKVVLLGSSDVGKTALSLRYVDGIFPKRLTSTIGASFLTRTINIEGNKIKYLIWDSAGQDRFRSLATLYYRGACVAILVFDITQQKTFDIVKGWVEELKANIQEEIIMVLCGNKIDLEQNRQVKSETAKLYADEINAMYVETSAKENEGVEGMFLEIGKKL 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 79/177 (44.63%), Postives = 114/177 (64.41%), Query Frame = 3
Query:   30 RSEHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            R+  P A      +  KLVLLG    GKSSL LR+VK  F      T+G AFF++ + V   ++K EIWDTAGQE+YHS+  +Y+RGA AA++VYDIT + SF +A++W+++L+ + +P  V+  L GNK DL   R+VT +E + +A    L FMETSAK    V+++F  +A+ L
Sbjct:    6 RTPQPRAAPSQPRV-FKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 180          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.205e-35
Identity = 75/192 (39.06%), Postives = 117/192 (60.94%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL----PRVQPAPNPSGMVLMDRPGERTASASCC 641
            KL+L+GD G GKS L+LRF + QF     +TIG  F  +T+ + +  VK ++WDTAGQER+ ++   YYRGA   ++VYD+T++ SF   + W Q +Q+  N  + + L GNK DL + R V+ E+ QA A + G+ F+E S+KT  NV + FY +A R+     + +   + SG + +   GE  +++ CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINI-AEGEENSASKCC 203          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.205e-35
Identity = 67/160 (41.88%), Postives = 105/160 (65.62%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + +++  +K +IWDTAGQE + S+   YYRG+A A++VYDIT + +F     W+++ ++  N NM + L GNK+D+   R V+ EE + +A ENGL F+ETSAKTA+NV + F   A ++
Sbjct:    7 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKI 166          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.205e-35
Identity = 75/171 (43.86%), Postives = 115/171 (67.25%), Query Frame = 3
Query:   48 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            +T   +   +KLVLLG    GK+SL LR++K  F      T+G AFF++ L +  +++K EIWDTAGQE+Y S+  +Y+RGA AA++VYDIT + SF +A++W+++L+ +  P  +V+ L GNK DL + R+VT +E + +A+   L FMETSAK    V++IF  +A+ L
Sbjct:   11 STASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLP-TVGCAFFTKVLDLGSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA8.030e-3645.51Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPTM1_MAIZE1.049e-3542.42GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB2B_MOUSE1.049e-3543.83Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RB11A_TOBAC1.370e-3541.58Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB14_DICDI1.370e-3540.31Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RABJ_DICDI3.051e-3545.73Ras-related protein RabJ OS=Dictyostelium discoide... [more]
RAB17_HUMAN3.051e-3544.63Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RYL1_YARLI5.205e-3539.06Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB2A_DICDI5.205e-3541.88Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB17_MOUSE5.205e-3543.86Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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