CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 70/168 (41.67%), Postives = 107/168 (63.69%), Query Frame = 3
Query:   69 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 572
            + AK+VLLG+   GK+SLVLR+ + +F +  E T+ A+F  + L +    ++  IWDTAGQERYH+L P+YYR +  AIIVYDIT++ SF +A+ W++EL+      + + + GNK DL   R V+ ++A  YA+  G     TSAK +  V ++F ++AKR+    P
Sbjct:   15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRILEANP 182          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 587
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   I+VYD+T+  SF   K+W+QE+Q     ++   L GNK DL++ + V    A+ YA   G+ F+ETSAK++ NV   F  +A  + ++Q    P+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPN 179          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   + V    A+ +A   G+ F+ETSAK ATNV   F  +A  +  R+ P     G     V +     + +   CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   + V    A+ +A   G+ F+ETSAK ATNV   F  +A  +  R+ P     G     V +     + +   CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   + V    A+ +A   G+ F+ETSAK ATNV   F  +A  +  R+ P     G     V +     + +   CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 77/193 (39.90%), Postives = 109/193 (56.48%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGM----VLMDRPGERTASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q SF   K+W+QE+    + N+   L GNK DL   + V    A+ +A   G+ F+ETSAK ATNV   F  +A  +  R+ P     G     V +     + +   CC
Sbjct:   13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGCC 205          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIF 536
            G +    K+V++GD   GKS+L+ R+ + +F    ++TIG  F +Q++ +    VK +IWDTAGQER+ ++   YYRGA  A++VYDIT + +FE   +W+ EL+   +  +   L GNK DL + R V+ EE +A A+E GLFF+ETSA  +TNV   F
Sbjct:    7 GREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAF 166          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.282e-33
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T  NV + F + A+ +
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.282e-33
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T  NV + F + A+ +
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.282e-33
Identity = 70/160 (43.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++G  G GKS L+ +F++ +F +    TIG  F S+ + V   TVK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   +PN+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T  NV + F + A+ +
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_GEOCY9.816e-3441.67Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAB1B_DICDI9.816e-3441.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB1A_RAT9.816e-3439.90Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE9.816e-3439.90Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN9.816e-3439.90Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA9.816e-3439.90Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
ARA1_ARATH9.816e-3442.50Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB4B_RAT1.282e-3343.75Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.282e-3343.75Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.282e-3343.75Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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