CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.872e-33
Identity = 74/203 (36.45%), Postives = 117/203 (57.64%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-------------QPAPNPSGM-VLMDRPGERTASASCCS 644
            K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK    + ++F ++ KR+                QP     G+ ++ D P  ++    CCS
Sbjct:   18 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGAARRGVQIIDDEPQAQSVGGGCCS 220          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.872e-33
Identity = 74/198 (37.37%), Postives = 116/198 (58.59%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFY----EIAKRLPRVQPAPNPSGMVLMDR-----PGERTASASCC 641
            KL+L+GD G GKS L+LRF  G F     +TIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+++SF   + W++ ++   + N+   L GNKAD+ ++ R V   + QA A E G+ F ETSAKT  NV ++F+    +I +RL        P+ + +         G+ T  ++CC
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSACC 214          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.363e-33
Identity = 72/195 (36.92%), Postives = 118/195 (60.51%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR-------VQPAPNPSGMVLMDRPGERTASASCC 641
            K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER+ ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D ++ R VTA++ +A A+E G+ F+E+SAK   NVN+IF+ +AK +         V       G + ++     ++ ++CC
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.363e-33
Identity = 66/160 (41.25%), Postives = 99/160 (61.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K +++G    GKS L+ RF+  +F      TIG  F S+ + +    VK +IWDTAGQER+ S+   YYRG+A   +VYD+TN+ S+     W+ ++++  +P++ + L GNKADL + R+VT  EA   AQENGL FMETSA T   V ++F +  + +
Sbjct:    9 KFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTI 168          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.363e-33
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 557
            K++L+GD   GK+ +V RF  G F   Q++TIG  F  + + +N   VK ++WDTAGQER+ ++   YYR A  AII YDIT + SFE    W+ E +  G  N++M L GNK+DL + R++  EEA   A+++GL   +ETSAK + NV+++F  +AK L
Sbjct:   17 KIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.310e-33
Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK----RLPRVQPAPNPSGMVLMDRP 611
            K + +GD G GKSS++LRF +  F E   STIG  F  +T+ +    +K +IWDTAGQER+       YRG  A ++VYD+T+Q SFE   KW+QE++     N++  + GNK+D++  + V    AQ +A    + F ETSAK A N+ D F  + K    R+   +P+   S  +++ +P
Sbjct:   10 KFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSSSTIILKKP 191          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.310e-33
Identity = 76/193 (39.38%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDR--PGER---TASASCC 641
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ +N  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T++ +FE  ++W+QE+      N+   L GNK+DL+  + V    A+A+A    + F+ETSAK +TNV   F  +A  +     A  P+  V  ++  PG     +  + CC
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPISPKSGCC 202          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.310e-33
Identity = 70/161 (43.48%), Postives = 105/161 (65.22%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRL 557
            K++L+GD   GK+ +V RF  G F++ Q++TIG  F  ++L +N   VK ++WDTAGQER+ ++   YYR A  AII YDIT + SFE    W+ E    G  N+++ L GNK+DL + R++  EEA   A+++GL   +ETSAK + NV+++F  +AK L
Sbjct:   17 KIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKEL 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.085e-32
Identity = 69/158 (43.67%), Postives = 105/158 (66.46%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 551
            K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER+ ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D +D R VT E+ +A A+E GL F+E+SAK   NVN+IF+ +A+
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSD-MDTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLAR 178          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.085e-32
Identity = 82/202 (40.59%), Postives = 118/202 (58.42%), Query Frame = 3
Query:   45 MATTGN-KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL-PRVQPAPNPSGMVLMDRPGERTASASCC 641
            + +TG+  ++  K++L+GD G GK+ L++RF  G F+     ST+G  F ++ L V+   VK +IWDTAGQER+ S+   YYR A A +++YDITN+ SF+  + W+ E+Q     ++V+ L GNK D    R V  E+ +  A+E GL FMETSA+T  NV+  F  IAK L  R   AP+     L D         SCC
Sbjct:   57 LGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFRLHDYVKREGRGVSCC 258          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_BOVIN4.872e-3336.45Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
ARA3_ARATH4.872e-3337.37Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
SEC4_YEAST6.363e-3336.92Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB4_DICDI6.363e-3341.25Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB19_XENTR6.363e-3343.48Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RABA_DICDI8.310e-3337.91Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB1A_DICDI8.310e-3339.38Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB19_XENLA8.310e-3343.48Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
SEC4_CANGA1.085e-3243.67Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB26_MOUSE1.085e-3240.59Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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