CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.037e-51
Identity = 110/176 (62.50%), Postives = 130/176 (73.86%), Query Frame = 3
Query:   48 ATTGNKN---INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 560
            + T  KN   IN KLVLLGD   GKSSLVLRFVK QF +++ESTIGAAF +QTL +++ T VK EIWDTAGQERY SLAPMYYR A  AI+VYDIT  AS E+AK W++ELQ Q    +V+ALAGNK DL   R+ V   +A+AYA E  L F ETSAKTA NVN++F  IAK+LP
Sbjct:    3 SNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.661e-47
Identity = 93/164 (56.71%), Postives = 119/164 (72.56%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD---ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLP 560
            KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER+ SLAPMYYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D+L     RKV  EE +  A+E GL F ETSAKT  NVND+F  I +++P
Sbjct:    9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.011e-46
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPN-PSGMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ ++F  I++++P + P  N  +G + +++P    AS  CC
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHENGNNGTIKVEKP-TMQASRRCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.560e-46
Identity = 94/188 (50.00%), Postives = 125/188 (66.49%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ ++F  I++++P + P  N +   +        AS  CC
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSGGIKLGNQSLQASRRCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.907e-45
Identity = 95/190 (50.00%), Postives = 125/190 (65.79%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR--VQPAPNPSGMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R+V   +A+ YA      F+ETSAK A N+N++F EI++R+P     PA    G  L  +P E     SCC
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRRQPSE--PKRSCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.907e-45
Identity = 93/188 (49.47%), Postives = 124/188 (65.96%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A N+ ++F  I++++P + P  N +   +        A   CC
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIKLGNQSLQAGRRCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.253e-45
Identity = 92/188 (48.94%), Postives = 121/188 (64.36%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQE + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A N+N++F EI++R+P     P   G     R        SCC
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSADANPPSGGKGFKLRRQPSEPQRSCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 4.248e-45
Identity = 97/191 (50.79%), Postives = 127/191 (66.49%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS---GMVLMDRPGERTASASCC 641
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A N+N++F EI++R+P    A  PS   G  L  +P E     SCC
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTD-ANLPSGGKGFKLRRQPSE--PKRSCC 194          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.860e-41
Identity = 93/189 (49.21%), Postives = 119/189 (62.96%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD--------------------ARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            KLVLLGD   GKSS+V RFVK  F E +ESTIGAAF SQ++ ++        D  +KFEIWDTAGQERY SLAPMYYR A AA++VYDIT + S ++A+ WV EL+ + G+ ++V+ L GNK DL                       R ++ EEA+ YAQE GL F E SAKT   V +IF +I ++L
Sbjct:    5 KLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKL 193          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.150e-40
Identity = 84/161 (52.17%), Postives = 114/161 (70.81%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRL 557
            KLVLLG++  GK+ +  R V+ +F    +STIGAAF  +++ V++  +K EIWDTAGQERY SL PMYYRGAAAA++VYDIT + +FE  K+WV ELQ   +PN+++ALAGNK DL + R+V  +E   Y  E G   F ETSA +  N+N++F EI +RL
Sbjct:   51 KLVLLGEMNTGKTCISSRLVRNEFGP-TDSTIGAAFLVKSMVVDNINIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDLPN-REVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRL 209          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT5_SCHPO3.037e-5162.50GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
VPS21_YEAST2.661e-4756.71Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB31_HUMAN1.011e-4650.79Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RAB31_MOUSE8.560e-4650.00Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RB22A_MOUSE1.907e-4550.00Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RAB31_RAT1.907e-4549.47Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RB22A_CANFA3.253e-4548.94Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RB22A_HUMAN4.248e-4550.79Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
YPT52_YEAST4.860e-4149.21GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RAB5B_DICDI3.150e-4052.17Putative ras-related protein Rab-5B OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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