CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:115..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.197e-39
Identity = 83/200 (41.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCCS 644
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   CS
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCS 207          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB6B_HUMAN (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.197e-39
Identity = 83/200 (41.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCCS 644
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   CS
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCS 207          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB6B_BOVIN (Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.197e-39
Identity = 83/200 (41.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS--GM--VLMDRPGERTASASCCS 644
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R++T EE +  A+E  + F+ETSAKT  NV  +F  +A  LP ++     S  GM  + +D+P E  AS   CS
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCS 207          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.667e-39
Identity = 77/163 (47.24%), Postives = 112/163 (68.71%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 566
            K VL+GD G GKS+L++RF + +F    +STIG  F ++ + +++  +K +IWDTAGQERY ++   YYRGA  A+IVYDIT Q+SF+   +W++EL+   + N+V+ L GNK DLL  R V+ EEAQA+A EN L F+ETSA  A+NV + F  +   + R+
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRI 174          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.667e-39
Identity = 78/163 (47.85%), Postives = 112/163 (68.71%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 566
            K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE   +W++EL+   +PN+V+ L GNK+DL     V  E+ ++YA++  L FMETSA  ATNV D F E+  ++ R+
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRI 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.667e-39
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 566
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++T  V    VK +IWDTAGQERY ++   YYRGA  A+++YD+T  A+FE A +W++EL+   +PN+V+ L GNK DL     V  EEA+A+A+   L+FMETSA  ATNV + F E+  ++ ++
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKI 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.941e-39
Identity = 78/163 (47.85%), Postives = 113/163 (69.33%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV 566
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE A +W++EL+   +PN+V+ L GNK+DL     V  E+ +++A+   L+FMETSA  ATNV + F E+  ++ R+
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRI 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.013e-38
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVL--MDRPGERTASASC 638
            KLV LG+   GK+SL+ RF+  QF    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AIIVYDITN  SF   +KW+++++A+   ++++ L GNK DL D R+VT EE +  A+E  +  METSAK   NV  +F +IA+ LP ++     S  ++    +P E  +S +C
Sbjct:   13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQMIDVSIQPNENESSCNC 201          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.324e-38
Identity = 80/200 (40.00%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMD----RPGERTASASCCS 644
            GN     KLV LG+   GK+SL+ RF+   F    ++TIG  F S+T+ + D T++ ++WDTAGQER+ SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GNK DL D R+V+ EE +  A+E  + F+ETSAK   NV  +F  +A  LP ++   + S   ++D    +P E+  S   CS
Sbjct:    8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPQEQPVSEGGCS 207          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.729e-38
Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV----------QPAPNPSGMVLMDRPGERTA--SASCCS 644
            KLVL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+D  VK +IWDTAGQERY ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+V+ L GNKADL   R V+ E+A+A+A+    FFMETSA  + NV + F E+   + +V           PA  P G  +     + +A     CCS
Sbjct:   16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGCCS 216          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6B_MOUSE1.197e-3941.50Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]
RAB6B_HUMAN1.197e-3941.50Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6... [more]
RAB6B_BOVIN1.197e-3941.50Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B ... [more]
YPT3_SCHPO2.667e-3947.24GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1B_ARATH2.667e-3947.85Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RAA1A_ARATH2.667e-3947.85Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11D_LOTJA5.941e-3947.85Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RYH1_SCHPO1.013e-3842.86GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RAB6A_CHICK1.324e-3840.00Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RB11B_TOBAC1.729e-3841.79Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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