CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 57/161 (35.40%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            KLV++G  G GKS+L ++ ++  FI+  + TI  ++  Q + +++ T   +I DTAGQE Y ++   Y R     ++VY IT+++SF+    + ++ L+ +    + M LAGNK DL   R+VT  E Q  A+  G  F+ETSAK   NV + FY + + +
Sbjct:    7 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVV-IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSAKARLNVEECFYGLVREI 166          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 61/161 (37.89%), Postives = 97/161 (60.25%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+ + V+++F EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 61/161 (37.89%), Postives = 97/161 (60.25%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+ + V+++F EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.268e-22
Identity = 61/161 (37.89%), Postives = 97/161 (60.25%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+ + V+++F EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 61/171 (35.67%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   51 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 524
            T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N             V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     NP++V  L GNKADL D R+V   +A+  A + G+ + ETSA T  NV
Sbjct:    2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   51 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNV 524
            T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +A N             V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     NP++V  L GNKADL D R+V   +A+  A++  + + ETSA T  NV
Sbjct:    2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARDLAEKYSIPYFETSAATGQNV 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB27A_MOUSE (Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 65/198 (32.83%), Postives = 107/198 (54.04%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVND----IFYEIAKRLPR-VQPAPNPSGMV 596
            G+ +   K + LGD G GK+S++ ++  G+F     +T+G  F  + +                +  ++WDTAGQER+ SL   ++R A   ++++D+TN+ SF   + W+ +LQ      NP++V  L GNK+DL D R V  EEA+  A++ G+ + ETSA   TN++     +   I KR+ R V  +  P G+V
Sbjct:    4 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERCVDKSWIPEGVV 199          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 56/169 (33.14%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQEN---------GLFFMETSAKTATNVNDIFYEIAKRL 557
            K+VL GD   GKSS ++R  K +F     +T+G  F  +TL V+      ++WDTAGQER+ S+A  Y+R A   +++YD+T + SF   ++W+  ++   +  + + + GNKADL   R++ AE+       N         G  F ETSAK  +N+ +    +A+ +
Sbjct:  524 KIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSFLNVREWIDMIEDATSEAIPIMMVGNKADL---RQLMAEQGHICVSTNYGEKLSRTYGALFCETSAKEGSNIVEAVLHLAREV 689          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 61/169 (36.09%), Postives = 101/169 (59.76%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAP 578
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ + L GNK DL D R V  E+ Q  A++ N   F+E+SAK+  NVN+IFY++ +++ R  P P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRKTPVP 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.869e-22
Identity = 61/191 (31.94%), Postives = 107/191 (56.02%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG-NPN-----MVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTAS 629
            KL+L+GDV  GK+S++ R +  +F E  +STIGA F S+T   ND     ++WDTAGQE+Y  L   ++R + A I+V+DI+N++SF     W ++ +++  NP+     + + L  NK+D L  R V   E   +  ++ +  + E SAK++ N+ +   ++ + +  ++   +       D P E T+S
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLANKSDSL-TRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVI--IEQDKDSDNEQFNDSPDEETSS 198          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS2_PHYPO2.268e-2235.40Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]
RAP2C_MOUSE2.268e-2237.89Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN2.268e-2237.89Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN2.268e-2237.89Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RB27B_HUMAN2.962e-2235.67Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RB27B_BOVIN2.962e-2235.67Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RB27A_MOUSE2.962e-2232.83Ras-related protein Rab-27A OS=Mus musculus GN=Rab... [more]
RASEF_XENTR2.962e-2233.14RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAP1B_CYPCA2.962e-2236.09Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RB32D_DICDI3.869e-2231.94Ras-related protein Rab-32D OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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