CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 61/205 (29.76%), Postives = 114/205 (55.61%), Query Frame = 3
Query:   45 MATTGNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 641
            MA   NKN ++    K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL D R+V  +EA+  A+E G+ ++ETSAKT  NV+ +F+++ + +   + + N           ++     CC
Sbjct:    1 MAANKNKNQSSLVLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDKNGKKSGKSKKGFKQRCC 204          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 52/169 (30.77%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   81 LVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRV-QPAPN 581
            ++L+GD   GKSS++ RF   QF +  + S I    F++ + +    +  + +DTAGQE++ +L+  YYR A   ++ YDI NQ +F+   +W++E+     PN+ + +  NK DL + R V    A+ +A +  +  +E SAK +  V + F ++A  + +  +P P+
Sbjct:   53 IILIGDQATGKSSVLQRFKNNQFEVCHKPSPIIIDCFTKKIQIEGKKISLKCYDTAGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRVVNFNNAKKFADDKNIPIIEVSAKESLGVEEAFIKLASEINKTWKPLPD 221          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 58/176 (32.95%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPR 563
            G+++   K++++GD   GK+SLV R+ +  F +  +ST+G  F  + L  +D   V+ ++WD AGQER+ S+  +YYR A+A +I++D+TN  +F  +++W Q+L ++     G P   + LA NK D L    V+ ++   +++ENG   + ETS K   N+N+    + +++ R
Sbjct:    2 GSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA-NKCD-LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.470e-21
Identity = 58/176 (32.95%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   57 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTATNVNDIFYEIAKRLPR 563
            G+++   K++++GD   GK+SLV R+ +  F +  +ST+G  F  + L  +D   V+ ++WD AGQER+ S+  +YYR A+A +I++D+TN  +F  +++W Q+L ++     G P   + LA NK D L    V+ ++   +++ENG   + ETS K   N+N+    + +++ R
Sbjct:    2 GSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA-NKCD-LSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.920e-21
Identity = 49/164 (29.88%), Postives = 99/164 (60.37%), Query Frame = 3
Query:   60 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 551
            N N + +L ++GD G GK+S+ ++F+   F+   + TI   +  Q L ++D     +I DTAGQ+  +++   + +     I+VY +T+++SF++ + ++ +++   +  + + +  NK+DL D R+VT +E + +A   G+ FME SAK   N++++F +IA+
Sbjct:   10 NNNNSMRLCVMGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCL-IDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQIAQ 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.920e-21
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 587
            KLV++G  G GKS+L ++F++  FIE  + TI  ++  Q   V++ T   +I DTAGQ+ Y ++   Y R     + VYD+T++ SFE      +++ + + N  + + L GNK DL + R+VT  E    A+   + F+ETSAK   NV++ F+E+ + + +    P  S
Sbjct:    8 KLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYRRQC-QVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREIKKSLKEPGRS 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 56/173 (32.37%), Postives = 102/173 (58.96%), Query Frame = 3
Query:   51 TTGNKNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 563
            TT   N N  KL ++GD G GK+S+ ++F+   F+ + + TI  ++  Q L ++D     +I DTAGQ+   ++   + R     I+VY +T+++SF++ + + +++ +     ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAKT  NV ++F E  + + R
Sbjct:    2 TTNKSNGNLVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNETVRCVKR 173          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   45 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   45 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.508e-21
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   45 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALBA_XENLA1.470e-2129.76Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RABZ_DICDI1.470e-2130.77Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RAB7L_PONAB1.470e-2132.95Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN1.470e-2132.95Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RASU_DICDI1.920e-2129.88Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RASB_DICDI1.920e-2133.92Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RASY_DICDI2.508e-2132.37Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RAN_XENTR2.508e-2134.50GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA2.508e-2134.50GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT2.508e-2134.50GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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