CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.530e-21
Identity = 59/172 (34.30%), Postives = 98/172 (56.98%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASF-ERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPS 587
            K+V+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +     ++VY I + ++F E      Q L+ +   ++ M L GNK DL D R ++ E+ +  A++ G  +F+E SAK   NV  IFY + +++ R  P   PS
Sbjct:    7 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRKNPVGPPS 177          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.530e-21
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 3
Query:   45 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA  G   I  KLVL+GD G GK++ + R + G+F +   +T+G    +     N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D  KV A+    + ++N L + + SAK+  N    F+ +A++L
Sbjct:    1 MAGQGKPQIQFKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKD-MKVKAKPILFHRKKN-LQYYDISAKSNYNFEKPFFWLARKL 168          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.530e-21
Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   66 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 551
            NI  KL ++GD   GKSSL+ RF    F E  + ++G  FF +T+ +   ++  +I DT+G E++ SL   +Y      +IVYDI++Q +FE  K W+ E       + +  +  +K D L+ + V +   ++YA    L F ETS+K + NV + F  + +
Sbjct:    5 NIKLKLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGESIDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLWLNEANKLAPKDCIKIIVASKFD-LENKVVDSNIVKSYADNLNLKFFETSSKNSINVEETFITLVE 165          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 52/172 (30.23%), Postives = 104/172 (60.47%), Query Frame = 3
Query:   54 TGNKNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 563
            +G KN N  KL ++GD G GK+++ ++F+   F+ + + TI  ++  Q + ++D     +I DTAGQ+   ++   + R     ++VY +T+++SF++   + +++ +   + ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAKT +N+ ++F E  + + R
Sbjct:    2 SGYKNNNLVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKR 172          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 572
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R  P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTP 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 572
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R  P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTP 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 572
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R  P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTP 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 60/167 (35.93%), Postives = 99/167 (59.28%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTATNVNDIFYEIAKRLPRVQP 572
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++     F+E+SAK+  NVN+IFY++ +++ R  P
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTP 170          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 55/190 (28.95%), Postives = 108/190 (56.84%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCC 641
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL + R+V  +EA+  A+E G+ ++ETSAKT  NV+ +F+++ + +   + + N           +++    CC
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSENKDKNGRKSSKSKKSFKERCC 204          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 54/161 (33.54%), Postives = 97/161 (60.25%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT  NV+ +F+++ + +
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 175          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAPA_DICDI9.530e-2134.30Ras-related protein rapA OS=Dictyostelium discoide... [more]
RANT_RAT9.530e-2133.92GTP-binding nuclear protein Ran, testis-specific i... [more]
RABH_DICDI9.530e-2132.72Ras-related protein RabH OS=Dictyostelium discoide... [more]
RASX_DICDI1.245e-2030.23Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RAP1A_RAT1.245e-2035.93Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE1.245e-2035.93Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN1.245e-2035.93Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN1.245e-2035.93Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
RALB_MOUSE1.245e-2028.95Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RALA_SAGOE1.245e-2033.54Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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