CF838391

Overview
NameCF838391
Unique NameCF838391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.165e-18
Identity = 55/171 (32.16%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   45 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA  G      K VL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     A+I++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+  N    F  +A++L
Sbjct:    1 MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 168          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 52/163 (31.90%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRLPR 563
            K+V+LG  G GKS++ ++F+  QF ++ + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE    A++    F ETSA     ++D F  + + + R
Sbjct:   22 KVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREIRR 183          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RERG_HUMAN (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 3
Query:   63 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRLPR 563
            K+   KL + G  G GKS+LV+RF+  +FI   + T+ + +  Q   ++D  V  EI DTAGQE        + R     ++VYDIT++ SFE        L     P N+ + L GNKADL  +R+V+ EE +  A E    F E SA T   N+ +IFYE+ + + R
Sbjct:    3 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ-AQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q + ++  T   +I DTAGQE Y ++   Y R     + V+ I N  SF     + ++++  + + ++ M L GNK DL  +R V  ++AQ  A+  G+ F+ETSAKT   V D FY + + +
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 54/174 (31.03%), Postives = 95/174 (54.60%), Query Frame = 3
Query:   45 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            MA    +N++    KL+++GD G GK++ + R + G+F    E T+G   +      N   ++FE WDTAGQE+Y  L   YY     AII++D+T + ++    +W ++L+ +   N+ + L GNK D + +R++  +   +Y ++  L + E SAK   N    F  +A+R+
Sbjct:    1 MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVD-VPSRQIKPKHV-SYHRKKCLQYYEMSAKNNCNFEKPFLYLARRI 171          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RERG_BOVIN (Ras-related and estrogen-regulated growth inhibitor OS=Bos taurus GN=RERG PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 3
Query:   63 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT-NVNDIFYEIAKRLPR 563
            K+   KL + G  G GKS+LV+RF+  +FI   + T+ + +  Q   ++D  V  EI DTAGQE        + R     ++VYDIT++ SFE        L     P N+ + L GNKADL  +R+V+ EE +  A E    F E SA T   N+ +IFYE+ + + R
Sbjct:    3 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVTMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 169          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK-TATNVNDIFYEIAKRLPRVQPAPN 581
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  A +  + ++ETSAK    NV+  F+++ + + +  P  N
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEKN 183          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK-TATNVNDIFYEIAKRLPRVQPAPN 581
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RKVT ++ +  A +  + ++ETSAK    NV+  F+++ + + +  P  N
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEKN 183          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 53/160 (33.12%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQ-ELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK-TATNVNDIFYEIAK 551
            KLV++GD G GKS+L ++F +  F+   + TI  ++   T   N   +  ++ DTAGQE + ++   Y R     +IVY +T++ASFE   ++ Q  L+ +   +  M L  NK DL+  RK+T E+ +  A ++ + ++ETSAK    NV+  F+++ +
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVR 173          
BLAST of CF838391 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 51/161 (31.68%), Postives = 89/161 (55.28%), Query Frame = 3
Query:   78 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAKRL 557
            KLV++G  G GKS+L ++ ++  F++  + TI  ++  Q   ++D  V  ++ DTAGQE Y ++   Y R     ++VY I +  SF+    +  + L+ + + N+ + + GNK DL   R+V+ E+  A A      F+ETSAK   NV + FY + + +
Sbjct:    6 KLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKQC-TIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNI 165          
The following BLAST results are available for this feature:
BLAST of CF838391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_DROME1.165e-1832.16GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RIT2_MOUSE1.521e-1831.90GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RERG_HUMAN1.521e-1836.69Ras-related and estrogen-regulated growth inhibito... [more]
RASN_XENLA1.521e-1832.92GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RAN4_ARATH1.521e-1831.03GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RERG_BOVIN1.987e-1836.69Ras-related and estrogen-regulated growth inhibito... [more]
RASM_RAT1.987e-1832.35Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE1.987e-1832.35Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASM_HUMAN1.987e-1833.13Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RAS1_CANAL1.987e-1831.68Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838391 ID=CF838391; Name=CF838391; organism=Citrus sinensis; type=EST; length=855bp
ACGCTGCGATCCAATTTTGATTCGGTCTTCGATCAGAGCACCCCATGGCC
ACCACTGGAAACAAAAACATCAATGCTAAATTGGTGCTGCTTGGAGATGT
TGGAGCTGGAAAGTCTAGTCTTGTACTGCGCTTTGTTAAAGGCCAATTCA
TTGAGTTTCAGGAATCAACCATTGGAGCTGCCTTTTTCTCACAAACATTA
GCTGTAAATGATGCTACTGTAAAATTTGAGATTTGGGATACAGCAGGACA
AGAGAGATACCATAGCTTGGCTCCAATGTACTATAGAGGAGCTGCCGCAG
CAATTATTGTGTACGATATAACAAATCAAGCCTCATTTGAGCGTGCTAAG
AAATGGGTCCAAGAACTTCAGGCACAAGGCAATCCAAATATGGTTATGGC
ACTTGCTGGTAACAAAGCTGACTTGTTGGATGCGAGGAAGGTCACGGCAG
AGGAAGCACAAGCTTATGCCCAGGAAAATGGCCTATTCTTTATGGAAACC
TCTGCAAAAACAGCAACCAATGTGAATGACATTTTCTATGAAATAGCAAA
GAGATTGCCTCGAGTGCAGCCAGCACCAAATCCATCAGGAATGGTTCTTA
TGGATAGACCTGGGGAAAGGACAGCGAGTGCATCATGTTGCTCTTAGATA
CTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTTCTAAATGGCTCCTCT
AGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCCAAGTTTGCTATCGTG
TATTATTTGTTGAGATATCAGAACTGTACATGCATCTTGCATTTGTATGA
ACTGGTAAATTGAATTGGAGAGTGGCTTCCCTTGTAATCAAAAAAAAAAA
AAAAA
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